The mycorrhizal symbiosis genomics

F Martin, A Kohler - The ecological genomics of fungi, 2013 - Wiley Online Library
Mycorrhizal symbioses are at the core of linkages between soil microbial processes,
vegetation, soil carbon storage and release, and movements of nutrients and water. The …

In-depth Phylogenomic Analysis of Arbuscular Mycorrhizal Fungi Based on a Comprehensive Set of de novo Genome Assemblies

M Montoliu-Nerin, M Sánchez-García… - Frontiers in fungal …, 2021 - frontiersin.org
Morphological characters and nuclear ribosomal DNA (rDNA) phylogenies have so far been
the basis of the current classifications of arbuscular mycorrhizal (AM) fungi. Improved …

Phylogenetic species delimitation in ectomycorrhizal fungi and implications for barcoding: the case of the Tricholoma scalpturatum complex (Basidiomycota)

P Jargeat, F Martos, F Carriconde, H Gryta… - Molecular …, 2010 - Wiley Online Library
Population studies have revealed that the fungal ectomycorrhizal morphospecies
Tricholoma scalpturatum consists of at least two genetically distinct groups that occur …

Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus

K Lin, E Limpens, Z Zhang, S Ivanov… - PLoS …, 2014 - journals.plos.org
Nuclei of arbuscular endomycorrhizal fungi have been described as highly diverse due to
their asexual nature and absence of a single cell stage with only one nucleus. This has …

Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi

B Looney, S Miyauchi, E Morin, E Drula… - New …, 2022 - Wiley Online Library
The ectomycorrhizal (ECM) symbiosis has independently evolved from diverse types of
saprotrophic ancestors. In this study, we seek to identify genomic signatures of the transition …

Strain-specific evolution and host-specific regulation of transposable elements in the model plant symbiont Rhizophagus irregularis

JIN Oliveira, N Corradi - G3: Genes, Genomes, Genetics, 2024 - academic.oup.com
Transposable elements (TEs) are repetitive DNA that can create genome structure and
regulation variability. The genome of Rhizophagus irregularis, a widely studied arbuscular …

Harnessing ectomycorrhizal genomics for ecological insights

F Martin, U Nehls - Current Opinion in Plant Biology, 2009 - Elsevier
The ectomycorrhizal (ECM) symbiosis is increasingly seen as a crucial component for
nutrient cycling in sustainable forest ecosystems. To date, the complete genome sequence …

Highly polymorphic DNA markers to specify strains of the ectomycorrhizal basidiomycete Tricholoma matsutake based on σ marY1, the long terminal repeat of gypsy …

H Murata, K Babasaki, A Yamada - Mycorrhiza, 2005 - Springer
The ectomycorrhizal basidiomycete Tricholoma matsutake produces commercially valuable
fruit bodies—matsutake—in Pinus sp. forest. Here we report that PCR with outward facing …

Metagenome sequence of E laphomyces granulatus from sporocarp tissue reveals A scomycota ectomycorrhizal fingerprints of genome expansion and a P …

CA Quandt, A Kohler, CN Hesse… - Environmental …, 2015 - Wiley Online Library
Many obligate symbiotic fungi are difficult to maintain in culture, and there is a growing need
for alternative approaches to obtaining tissue and subsequent genomic assemblies from …

The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution

S Traeger, F Altegoer, M Freitag, T Gabaldon… - PLoS …, 2013 - journals.plos.org
Fungi are a large group of eukaryotes found in nearly all ecosystems. More than 250 fungal
genomes have already been sequenced, greatly improving our understanding of fungal …