Comparison of SARS-CoV-2 whole genome sequencing using tiled amplicon enrichment and bait hybridization

A Koskela von Sydow, CM Lindqvist, N Asghar… - Scientific Reports, 2023 - nature.com
The severe acute respiratory syndrome coronavirus 2 (SARS‑CoV‑2) pandemic has led to
extensive virological monitoring by whole genome sequencing (WGS). Investigating the …

A comparison of whole genome sequencing of SARS-CoV-2 using amplicon-based sequencing, random hexamers, and bait capture

JA Nasir, RA Kozak, P Aftanas, AR Raphenya… - Viruses, 2020 - mdpi.com
Genome sequencing of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is
increasingly important to monitor the transmission and adaptive evolution of the virus. The …

Evaluation of NGS-based approaches for SARS-CoV-2 whole genome characterisation

C Charre, C Ginevra, M Sabatier, H Regue… - Virus …, 2020 - academic.oup.com
Since the beginning of the COVID-19 outbreak, SARS-CoV-2 whole-genome sequencing
(WGS) has been performed at unprecedented rate worldwide with the use of very diverse …

A comparison of five Illumina, Ion Torrent, and nanopore sequencing technology-based approaches for whole genome sequencing of SARS-CoV-2

EC Carbo, K Mourik, SA Boers, BO Munnink… - European Journal of …, 2023 - Springer
Rapid identification of the rise and spread of severe acute respiratory syndrome coronavirus
2 (SARS-CoV-2) variants of concern remains critical for monitoring of the efficacy of …

SARS-CoV-2 whole genome amplification and sequencing for effective population-based surveillance and control of viral transmission

D Harilal, S Ramaswamy, T Loney… - Clinical …, 2020 - academic.oup.com
Background With the gradual reopening of economies and resumption of social life, robust
surveillance mechanisms should be implemented to control the ongoing COVID-19 …

A benchmarking study of SARS-CoV-2 whole-genome sequencing protocols using COVID-19 patient samples

T Liu, Z Chen, W Chen, X Chen, M Hosseini, Z Yang… - IScience, 2021 - cell.com
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is an emerging new type of
coronavirus that is responsible for the COVID-19 pandemic and the unprecedented global …

Sensitive recovery of complete SARS-CoV-2 genomes from clinical samples by use of Swift Biosciences' SARS-CoV-2 multiplex amplicon sequencing panel

A Addetia, MJ Lin, V Peddu… - Journal of clinical …, 2020 - Am Soc Microbiol
Whole-genome sequencing (WGS) of severe acute respiratory syndrome coronavi-rus 2
(SARS-CoV-2) has led to a better understanding of the virus's origin, transmission, and …

Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples

M Xiao, X Liu, J Ji, M Li, J Li, L Yang, W Sun, P Ren… - Genome medicine, 2020 - Springer
Abstract Background COVID-19 (coronavirus disease 2019) has caused a major epidemic
worldwide; however, much is yet to be known about the epidemiology and evolution of the …

Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid Barcoding

NE Freed, M Vlková, MB Faisal… - Biology Methods and …, 2020 - academic.oup.com
Rapid and cost-efficient whole-genome sequencing of severe acute respiratory syndrome
coronavirus 2 (SARS-CoV-2), the virus that causes coronavirus disease 2019, is critical for …

CalmBelt: rapid SARS-CoV-2 genome characterization for outbreak tracking

H Yingtaweesittikul, K Ko, N Abdul Rahman… - Frontiers in …, 2021 - frontiersin.org
Background: The ongoing COVID-19 pandemic is a global health crisis caused by the
spread of SARS-CoV-2. Establishing links between known cases is crucial for the …