[HTML][HTML] Improved genetic prediction of complex traits from individual-level data or summary statistics
Most existing tools for constructing genetic prediction models begin with the assumption that
all genetic variants contribute equally towards the phenotype. However, this represents a …
all genetic variants contribute equally towards the phenotype. However, this represents a …
[HTML][HTML] Improved polygenic prediction by Bayesian multiple regression on summary statistics
Accurate prediction of an individual's phenotype from their DNA sequence is one of the great
promises of genomics and precision medicine. We extend a powerful individual-level data …
promises of genomics and precision medicine. We extend a powerful individual-level data …
Mixed-model association for biobank-scale datasets
To the Editor—Despite recent work highlighting the advantages of linear mixedmodel (LMM)
methods for genome-wide association studies (GWAS) in datasets containing relatedness or …
methods for genome-wide association studies (GWAS) in datasets containing relatedness or …
Pitfalls of predicting complex traits from SNPs
The success of genome-wide association studies (GWASs) has led to increasing interest in
making predictions of complex trait phenotypes, including disease, from genotype data …
making predictions of complex trait phenotypes, including disease, from genotype data …
[HTML][HTML] Leveraging functional genomic annotations and genome coverage to improve polygenic prediction of complex traits within and between ancestries
We develop a method, SBayesRC, that integrates genome-wide association study (GWAS)
summary statistics with functional genomic annotations to improve polygenic prediction of …
summary statistics with functional genomic annotations to improve polygenic prediction of …
Improving GWAS discovery and genomic prediction accuracy in biobank data
EJ Orliac, D Trejo Banos, SE Ojavee… - Proceedings of the …, 2022 - National Acad Sciences
Genetically informed, deep-phenotyped biobanks are an important research resource and it
is imperative that the most powerful, versatile, and efficient analysis approaches are used …
is imperative that the most powerful, versatile, and efficient analysis approaches are used …
Genome-wide prediction of traits with different genetic architecture through efficient variable selection
In genome-based prediction there is considerable uncertainty about the statistical model
and method required to maximize prediction accuracy. For traits influenced by a small …
and method required to maximize prediction accuracy. For traits influenced by a small …
[HTML][HTML] Regularized machine learning in the genetic prediction of complex traits
Compared to univariate analysis of genome-wide association (GWA) studies, machine
learning–based models have been shown to provide improved means of learning such …
learning–based models have been shown to provide improved means of learning such …
[HTML][HTML] Genome-wide prediction of discrete traits using Bayesian regressions and machine learning
O González-Recio, S Forni - Genetics Selection Evolution, 2011 - Springer
Background Genomic selection has gained much attention and the main goal is to increase
the predictive accuracy and the genetic gain in livestock using dense marker information …
the predictive accuracy and the genetic gain in livestock using dense marker information …
Evaluating and improving heritability models using summary statistics
There is currently much debate regarding the best model for how heritability varies across
the genome. The authors of GCTA recommend the GCTA-LDMS-I model, the authors of LD …
the genome. The authors of GCTA recommend the GCTA-LDMS-I model, the authors of LD …