Improving the performance of somatic mutation identification by recovering circulating tumor DNA mutations

Y Fu, C Jovelet, T Filleron, M Pedrero, N Motté… - Cancer research, 2016 - AACR
DNA extracted from cancer patients' whole blood may contain somatic mutations from
circulating tumor DNA (ctDNA) fragments. In this study, we introduce cmDetect, a …

[HTML][HTML] Detection rate of actionable mutations in diverse cancers using a biopsy-free (blood) circulating tumor cell DNA assay

M Schwaederle, H Husain, PT Fanta, DE Piccioni… - Oncotarget, 2016 - ncbi.nlm.nih.gov
Abstract Analysis of cell-free DNA using next-generation sequencing (NGS) is a powerful
tool for the detection/monitoring of alterations present in circulating tumor DNA (ctDNA) …

Evaluating somatic tumor mutation detection without matched normal samples

JK Teer, Y Zhang, L Chen, EA Welsh, WD Cress… - Human genomics, 2017 - Springer
Background Observations of recurrent somatic mutations in tumors have led to identification
and definition of signaling and other pathways that are important for cancer progression and …

[HTML][HTML] Prospective blinded study of somatic mutation detection in cell-free DNA utilizing a targeted 54-gene next generation sequencing panel in metastatic solid …

ST Kim, WS Lee, RB Lanman, S Mortimer, OA Zill… - Oncotarget, 2015 - ncbi.nlm.nih.gov
Prospective blinded study of somatic mutation detection in cell-free DNA utilizing a targeted
54-gene next generation sequencing panel in metastatic solid tumor patients - PMC Back to …

Genome-wide cell-free DNA mutation integration for sensitive cancer detection

A Zviran, ST Hill, R Schulman, M Shah… - Cancer …, 2018 - aacrjournals.org
Solid malignancies are often diagnosed at a late stage with dismal prognosis. Even after
cancer is diagnosed, we lack sensitive tools to guide difficult therapeutic decisions such as …

Design of a targeted sequencing assay to detect rare mutations in circulating tumor DNA

J Chen, J Chen, F He, Y Huang, S Lu… - Genetic Testing and …, 2019 - liebertpub.com
Background: Qualitative and quantitative detection of circulating tumor DNA (ctDNA) is a
liquid biopsy technology used for early cancer diagnosis. However, the plasma ctDNA …

Somatic tumor mutations detected by targeted next generation sequencing in minute amounts of serum-derived cell-free DNA

MJA Weerts, R van Marion, JCA Helmijr… - Scientific Reports, 2017 - nature.com
The use of blood-circulating cell-free DNA (cfDNA) as 'liquid-biopsy'is explored worldwide,
with hopes for its potential in providing prognostic or predictive information in cancer …

Enhanced specificity of clinical high-sensitivity tumor mutation profiling in cell-free DNA via paired normal sequencing using MSK-ACCESS

A Rose Brannon, G Jayakumaran, M Diosdado… - Nature …, 2021 - nature.com
Circulating cell-free DNA from blood plasma of cancer patients can be used to non-
invasively interrogate somatic tumor alterations. Here we develop MSK-ACCESS (Memorial …

TNER: a novel background error suppression method for mutation detection in circulating tumor DNA

S Deng, M Lira, D Huang, K Wang, C Valdez… - BMC …, 2018 - Springer
Background Ultra-deep next-generation sequencing of circulating tumor DNA (ctDNA) holds
great promise as a tool for the early detection of cancer and for monitoring disease …

Enhanced specificity of high sensitivity somatic variant profiling in cell-free DNA via paired normal sequencing: design, validation, and clinical experience of the MSK …

AR Brannon, G Jayakumaran, M Diosdado, J Patel… - bioRxiv, 2020 - biorxiv.org
Circulating cell-free DNA (cfDNA) from blood plasma of cancer patients can be used to
interrogate somatic tumor alterations non-invasively or when adequate tissue is unavailable …