Processing and analysis of CASP3 protein structure predictions
Abstract Livermore Prediction Center provides basic infrastructure for the CASP (Critical
Assessment of Structure Prediction) experiments, including prediction processing and …
Assessment of Structure Prediction) experiments, including prediction processing and …
PROSPECT II: protein structure prediction program for genome‐scale applications
A new method for fold recognition is developed and added to the general protein structure
prediction package PROSPECT (http://compbio. ornl. gov/PROSPECT/). The new method …
prediction package PROSPECT (http://compbio. ornl. gov/PROSPECT/). The new method …
CASP prediction center infrastructure and evaluation measures in CASP10 and CASP ROLL
A Kryshtafovych, B Monastyrskyy… - … : structure, function, and …, 2014 - Wiley Online Library
ABSTRACT The Protein Structure Prediction Center at the University of California, Davis,
supports the CASP experiments by identifying prediction targets, accepting predictions …
supports the CASP experiments by identifying prediction targets, accepting predictions …
Critical assessment of methods of protein structure prediction (CASP)—Round XIII
CASP (critical assessment of structure prediction) assesses the state of the art in modeling
protein structure from amino acid sequence. The most recent experiment (CASP13 held in …
protein structure from amino acid sequence. The most recent experiment (CASP13 held in …
LOCUSTRA: accurate prediction of local protein structure using a two-layer support vector machine approach
O Zimmermann, UHE Hansmann - Journal of chemical information …, 2008 - ACS Publications
Constraint generation for 3d structure prediction and structure-based database searches
benefit from fine-grained prediction of local structure. In this work, we present LOCUSTRA, a …
benefit from fine-grained prediction of local structure. In this work, we present LOCUSTRA, a …
PROTINFO: new algorithms for enhanced protein structure predictions
LH Hung, SC Ngan, T Liu… - Nucleic acids research, 2005 - academic.oup.com
We describe new algorithms and modules for protein structure prediction available as part of
the PROTINFO web server. The modules, comparative and de novo modelling, have …
the PROTINFO web server. The modules, comparative and de novo modelling, have …
Evaluation of free modeling targets in CASP11 and ROLL
LN Kinch, W Li, B Monastyrskyy… - Proteins: Structure …, 2016 - Wiley Online Library
We present an assessment of 'template‐free modeling'(FM) in CASP11and ROLL.
Community‐wide server performance suggested the use of automated scores similar to …
Community‐wide server performance suggested the use of automated scores similar to …
The other 90% of the protein: Assessment beyond the Cαs for CASP8 template‐based and high‐accuracy models
For template‐based modeling in the CASP8 Critical Assessment of Techniques for Protein
Structure Prediction, this work develops and applies six new full‐model metrics. They are …
Structure Prediction, this work develops and applies six new full‐model metrics. They are …
[引用][C] Critical assessment of methods of protein structure prediction (CASP): round III
1Center for Advanced Research in Biotechnology, University of Maryland Biotechnology
Institute, Rockville, Maryland 2Sanger Centre, Wellcome Trust Genome Campus …
Institute, Rockville, Maryland 2Sanger Centre, Wellcome Trust Genome Campus …
A computational pipeline for protein structure prediction and analysis at genome scale
Motivation: Experimental techniques alone cannot keep up with the production rate of
protein sequences, while computational techniques for protein structure predictions have …
protein sequences, while computational techniques for protein structure predictions have …