Zooming in on protein–RNA interactions: a multi-level workflow to identify interaction partners

A Colantoni, J Rupert, A Vandelli… - Biochemical Society …, 2020 - portlandpress.com
Interactions between proteins and RNA are at the base of numerous cellular regulatory and
functional phenomena. The investigation of the biological relevance of non-coding RNAs …

RNA–protein interactions: an overview

A Re, T Joshi, E Kulberkyte, Q Morris… - RNA sequence, structure …, 2014 - Springer
RNA binding proteins (RBPs) are key players in the regulation of gene expression. In this
chapter we discuss the main protein–RNA recognition modes used by RBPs in order to …

[HTML][HTML] Computational approaches for the analysis of RNA–protein interactions: a primer for biologists

KS Moore, P AC't Hoen - Journal of Biological Chemistry, 2019 - ASBMB
RNA-binding proteins (RBPs) play important roles in the control of gene expression and the
coordination of different layers of post-transcriptional regulation. Interactions between …

RNA-centric approaches to study RNA-protein interactions in vitro and in silico

A Dasti, F Cid-Samper, E Bechara, GG Tartaglia - Methods, 2020 - Elsevier
Given their central role in translation, splicing, localization and stability of transcripts, RNA
binding proteins (RBPs) are key regulators of several cellular processes. While experimental …

High-throughput characterization of protein–RNA interactions

KB Cook, TR Hughes, QD Morris - Briefings in functional …, 2015 - academic.oup.com
RNA-binding proteins (RBPs) are important regulators of eukaryotic gene expression.
Genomes typically encode dozens to hundreds of proteins containing RNA-binding …

RBPmap: a tool for mapping and predicting the binding sites of RNA-binding proteins considering the motif environment

I Paz, A Argoetti, N Cohen, N Even… - Post-Transcriptional …, 2022 - Springer
RNA-binding proteins (RBPs) play a key role in post-transcriptional regulation via binding to
coding and non-coding RNAs. Recent development in experimental technologies, aimed to …

[HTML][HTML] The expanding universe of ribonucleoproteins: of novel RNA-binding proteins and unconventional interactions

BM Beckmann, A Castello, J Medenbach - Pflügers Archiv-European …, 2016 - Springer
Post-transcriptional regulation of gene expression plays a critical role in almost all cellular
processes. Regulation occurs mostly by RNA-binding proteins (RBPs) that recognise RNA …

[HTML][HTML] 'Oming in on RNA–protein interactions

JL Rinn, J Ule - Genome biology, 2014 - Springer
RNA has consistently broken dogmas, owing to its multitude of unexpected functions.
However, RNA does faithfully adhere to one rule: it always functions through interactions …

[HTML][HTML] Ribonomic approaches to study the RNA-binding proteome

C Faoro, SF Ataide - FEBS letters, 2014 - Elsevier
Gene expression is controlled through a complex interplay among mRNAs, non-coding
RNAs and RNA-binding proteins (RBPs), which all assemble along with other RNA …

A brave new world of RNA-binding proteins

MW Hentze, A Castello, T Schwarzl… - Nature reviews Molecular …, 2018 - nature.com
RNA-binding proteins (RBPs) are typically thought of as proteins that bind RNA through one
or multiple globular RNA-binding domains (RBDs) and change the fate or function of the …