Genome‐Wide Fitness and Genetic Interactions Determined by Tn‐seq, a High‐Throughput Massively Parallel Sequencing Method for Microorganisms: Emerging …
T van Opijnen, DW Lazinski… - Current protocols in …, 2015 - Wiley Online Library
The lagging annotation of bacterial genomes and the inherent genetic complexity of many
phenotypes is hindering the discovery of new drug targets and the development of new …
phenotypes is hindering the discovery of new drug targets and the development of new …
Escherichia coli as a model organism and its application in biotechnology
VMN Idalia, F Bernardo - … . Biotechnol. Appl. Tech Open Rij. Croat, 2017 - books.google.com
Without a doubt, in the past 20 or so years, we have achieved the power of biology in
different ways. In the present, we have many tools for developing novel technologies and …
different ways. In the present, we have many tools for developing novel technologies and …
[HTML][HTML] Synthetic control of plasmid replication enables target-and self-curing of vectors and expedites genome engineering of Pseudomonas putida
Genome engineering of non-conventional microorganisms calls for the development of
dedicated synthetic biology tools. Pseudomonas putida is a Gram-negative, non-pathogenic …
dedicated synthetic biology tools. Pseudomonas putida is a Gram-negative, non-pathogenic …
Genomic BLAST: custom-defined virtual databases for complete and unfinished genomes
L Cummings, L Riley, L Black… - FEMS Microbiology …, 2002 - academic.oup.com
Abstract BLAST (Basic Local Alignment Search Tool) searches against DNA and protein
sequence databases have become an indispensable tool for biomedical research. The …
sequence databases have become an indispensable tool for biomedical research. The …
VRprofile: gene-cluster-detection-based profiling of virulence and antibiotic resistance traits encoded within genome sequences of pathogenic bacteria
J Li, C Tai, Z Deng, W Zhong, Y He… - Briefings in …, 2018 - academic.oup.com
VRprofile is a Web server that facilitates rapid investigation of virulence and antibiotic
resistance genes, as well as extends these trait transfer-related genetic contexts, in newly …
resistance genes, as well as extends these trait transfer-related genetic contexts, in newly …
[HTML][HTML] High quality 3C de novo assembly and annotation of a multidrug resistant ST-111 Pseudomonas aeruginosa genome: Benchmark of hybrid and non-hybrid …
Genotyping methods and genome sequencing are indispensable to reveal genomic
structure of bacterial species displaying high level of genome plasticity. However …
structure of bacterial species displaying high level of genome plasticity. However …
[HTML][HTML] PlasmidMaker is a versatile, automated, and high throughput end-to-end platform for plasmid construction
Plasmids are used extensively in basic and applied biology. However, design and
construction of plasmids, specifically the ones carrying complex genetic information, remains …
construction of plasmids, specifically the ones carrying complex genetic information, remains …
Engineering of bacterial strains and vectors for the production of plasmid DNA
DM Bower, KLJ Prather - Applied microbiology and biotechnology, 2009 - Springer
The demand for plasmid DNA (pDNA) is anticipated to increase significantly as DNA
vaccines and non-viral gene therapies enter phase 3 clinical trials and are approved for use …
vaccines and non-viral gene therapies enter phase 3 clinical trials and are approved for use …
[HTML][HTML] Reduced evolvability of Escherichia coli MDS42, an IS-less cellular chassis for molecular and synthetic biology applications
Background Evolvability is an intrinsic feature of all living cells. However, newly emerging,
evolved features can be undesirable when genetic circuits, designed and fabricated by …
evolved features can be undesirable when genetic circuits, designed and fabricated by …
Alliance of Genome Resources Portal: unified model organism research platform
Nucleic acids research, 2020 - academic.oup.com
Abstract The Alliance of Genome Resources (Alliance) is a consortium of the major model
organism databases and the Gene Ontology that is guided by the vision of facilitating …
organism databases and the Gene Ontology that is guided by the vision of facilitating …