Auto-CORPus: A natural language processing tool for standardizing and reusing biomedical literature
To analyse large corpora using machine learning and other Natural Language Processing
(NLP) algorithms, the corpora need to be standardized. The BioC format is a community …
(NLP) algorithms, the corpora need to be standardized. The BioC format is a community …
BioLitMine: advanced mining of biomedical and biological literature about human genes and genes from major model organisms
The accumulation of biological and biomedical literature outpaces the ability of most
researchers and clinicians to stay abreast of their own immediate fields, let alone a broader …
researchers and clinicians to stay abreast of their own immediate fields, let alone a broader …
On expert curation and scalability: UniProtKB/Swiss-Prot as a case study
Motivation Biological knowledgebases, such as UniProtKB/Swiss-Prot, constitute an
essential component of daily scientific research by offering distilled, summarized and …
essential component of daily scientific research by offering distilled, summarized and …
[HTML][HTML] SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data
A Venkatesan, JH Kim, F Talo, M Ide-Smith… - Wellcome open …, 2016 - ncbi.nlm.nih.gov
The tremendous growth in biological data has resulted in an increase in the number of
research papers being published. This presents a great challenge for scientists in searching …
research papers being published. This presents a great challenge for scientists in searching …
MyMiner: a web application for computer-assisted biocuration and text annotation
D Salgado, M Krallinger, M Depaule, E Drula… - …, 2012 - academic.oup.com
Motivation: The exponential growth of scientific literature has resulted in a massive amount
of unstructured natural language data that cannot be directly handled by means of …
of unstructured natural language data that cannot be directly handled by means of …
Textpresso Central: a customizable platform for searching, text mining, viewing, and curating biomedical literature
HM Müller, KM Van Auken, Y Li, PW Sternberg - BMC bioinformatics, 2018 - Springer
Background The biomedical literature continues to grow at a rapid pace, making the
challenge of knowledge retrieval and extraction ever greater. Tools that provide a means to …
challenge of knowledge retrieval and extraction ever greater. Tools that provide a means to …
BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature
G de la Calle, M Garcia-Remesal, S Chiesa… - BMC …, 2009 - Springer
Background The rapid evolution of Internet technologies and the collaborative approaches
that dominate the field have stimulated the development of numerous bioinformatics …
that dominate the field have stimulated the development of numerous bioinformatics …
Closing the computational biology 'knowledge gap': Spanish Wikipedia as a case study
N Sélem-Mojica, T Karakulak, A Anjum… - …, 2024 - academic.oup.com
Motivation Wikipedia is a vital open educational resource in computational biology. The
quality of computational biology coverage in English-language Wikipedia has improved …
quality of computational biology coverage in English-language Wikipedia has improved …
Processing biological literature with customizable Web services supporting interoperable formats
Web services have become a popular means of interconnecting solutions for processing a
body of scientific literature. This has fuelled research on high-level data exchange formats …
body of scientific literature. This has fuelled research on high-level data exchange formats …
Open sourcing ecological data
CS Parr - BioScience, 2007 - academic.oup.com
MD 21250. tor of the data, have a head start and be more likely to do the better job?
Informatics studies are often highly collaborative. Most likely the best people for such …
Informatics studies are often highly collaborative. Most likely the best people for such …