Extracting information automatically from biological literature
C Blaschke, R Hoffmann, JC Oliveros… - Comparative and …, 2001 - ncbi.nlm.nih.gov
In the past few decades, biologists have generated a large amount of data that has been
published mainly in biological journals. It is now important to be able to recover as much as …
published mainly in biological journals. It is now important to be able to recover as much as …
Making your database available through Wikipedia: the pros and cons
Wikipedia, the online encyclopedia, is the most famous wiki in use today. It contains over 3.7
million pages of content; with many pages written on scientific subject matters that include …
million pages of content; with many pages written on scientific subject matters that include …
[PDF][PDF] Biomedical text mining for research rigor and integrity: tasks, challenges, directions
H Kilicoglu - Briefings in bioinformatics, 2018 - academic.oup.com
An estimated quarter of a trillion US dollars is invested in the biomedical research enterprise
annually. There is growing alarm that a significant portion of this investment is wasted …
annually. There is growing alarm that a significant portion of this investment is wasted …
Comparing the use of research resource identifiers and natural language processing for citation of databases, software, and other digital artifacts
CN Hsu, AE Bandrowski, TH Gillespie… - … in Science & …, 2019 - ieeexplore.ieee.org
The Research Resource Identifier (RRID) was introduced in 2014 to better identify
biomedical research resources and track their use across the literature, including key digital …
biomedical research resources and track their use across the literature, including key digital …
Understanding life sciences data curation practices via user research
A Venkatesan, N Karamanis, M Ide-Smith… - …, 2019 - f1000research.com
Background: Manual curation is a cornerstone of public biological data resources. However,
it is a time-consuming process that urgently needs supportive technical solutions in the face …
it is a time-consuming process that urgently needs supportive technical solutions in the face …
Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses
Biomedical data repositories such as the Gene Expression Omnibus (GEO) enable the
search and discovery of relevant biomedical digital data objects. Similarly, resources such …
search and discovery of relevant biomedical digital data objects. Similarly, resources such …
Database citation in supplementary data linked to Europe PubMed Central full text biomedical articles
Background In this study, we present an analysis of data citation practices in full text
research articles and their corresponding supplementary data files, made available in the …
research articles and their corresponding supplementary data files, made available in the …
the translational Data Catalog-discoverable biomedical datasets
D Welter, P Rocca-Serra, V Grouès, N Sallam… - Scientific Data, 2023 - nature.com
The discoverability of datasets resulting from the diverse range of translational and
biomedical projects remains sporadic. It is especially difficult for datasets emerging from pre …
biomedical projects remains sporadic. It is especially difficult for datasets emerging from pre …
Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup
AS Yeh, L Hirschman, AA Morgan - arXiv preprint cs/0308032, 2003 - arxiv.org
MOTIVATION: The biological literature is a major repository of knowledge. Many biological
databases draw much of their content from a careful curation of this literature. However, as …
databases draw much of their content from a careful curation of this literature. However, as …
Scratchpads: a data-publishing framework to build, share and manage information on the diversity of life
Abstract Background Natural History science is characterised by a single immense goal (to
document, describe and synthesise all facets pertaining to the diversity of life) that can only …
document, describe and synthesise all facets pertaining to the diversity of life) that can only …