RNA-seq-Based Gene Annotation and Comparative Genomics of Four Fungal Grass Pathogens in the Genus Zymoseptoria Identify Novel Orphan Genes and …
J Grandaubert, A Bhattacharyya… - G3: Genes, Genomes …, 2015 - academic.oup.com
The fungal pathogen Zymoseptoria tritici (synonym Mycosphaerella graminicola) is a
prominent pathogen of wheat. The reference genome of the isolate IPO323 is one of the best …
prominent pathogen of wheat. The reference genome of the isolate IPO323 is one of the best …
[HTML][HTML] Genome compartmentalization predates species divergence in the plant pathogen genus Zymoseptoria
Background Antagonistic co-evolution can drive rapid adaptation in pathogens and shape
genome architecture. Comparative genome analyses of several fungal pathogens revealed …
genome architecture. Comparative genome analyses of several fungal pathogens revealed …
[HTML][HTML] Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome
C Plissonneau, FE Hartmann, D Croll - BMC biology, 2018 - Springer
Background Structural variation contributes substantially to polymorphism within species.
Chromosomal rearrangements that impact genes can lead to functional variation among …
Chromosomal rearrangements that impact genes can lead to functional variation among …
[HTML][HTML] Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen
H Chen, R King, D Smith, C Bayon, T Ashfield… - BMC biology, 2023 - Springer
Background Studying genomic variation in rapidly evolving pathogens potentially enables
identification of genes supporting their “core biology”, being present, functional and …
identification of genes supporting their “core biology”, being present, functional and …
[HTML][HTML] A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici
Background The gene content of a species largely governs its ecological interactions and
adaptive potential. A species is therefore defined by both core genes shared between all …
adaptive potential. A species is therefore defined by both core genes shared between all …
[HTML][HTML] Recent advances in the Zymoseptoria tritici–wheat interaction: insights from pathogenomics
MC McDonald, BA McDonald… - Frontiers in plant science, 2015 - frontiersin.org
We examine the contribution of next generation sequencing (NGS) to our understanding of
the interaction between the fungal pathogen Zymoseptoria tritici and its wheat host. Recent …
the interaction between the fungal pathogen Zymoseptoria tritici and its wheat host. Recent …
Comparative Transcriptome Analyses in Zymoseptoria tritici Reveal Significant Differences in Gene Expression Among Strains During Plant Infection
J Palma-Guerrero, X Ma, SFF Torriani… - Molecular Plant …, 2017 - Am Phytopath Society
Zymoseptoria tritici is an ascomycete fungus that causes Septoria tritici blotch, a globally
distributed foliar disease on wheat. Z. tritici populations are highly polymorphic and exhibit …
distributed foliar disease on wheat. Z. tritici populations are highly polymorphic and exhibit …
Expression Profiling of the Wheat Pathogen Zymoseptoria tritici Reveals Genomic Patterns of Transcription and Host-Specific Regulatory Programs
R Kellner, A Bhattacharyya, S Poppe… - Genome biology and …, 2014 - academic.oup.com
Host specialization by pathogens requires a repertoire of virulence factors as well as fine-
tuned regulation of gene expression. The fungal wheat pathogen Zymoseptoria tritici …
tuned regulation of gene expression. The fungal wheat pathogen Zymoseptoria tritici …
The evolution of orphan regions in genomes of a fungal pathogen of wheat
C Plissonneau, A Stürchler, D Croll - MBio, 2016 - Am Soc Microbiol
Fungal plant pathogens rapidly evolve virulence on resistant hosts through mutations in
genes encoding proteins that modulate the host immune responses. The mutational …
genes encoding proteins that modulate the host immune responses. The mutational …
Interspecific gene exchange introduces high genetic variability in crop pathogen
A Feurtey, DM Stevens, W Stephan… - Genome Biology and …, 2019 - academic.oup.com
Genome analyses have revealed a profound role of hybridization and introgression in the
evolution of many eukaryote lineages, including fungi. The impact of recurrent introgression …
evolution of many eukaryote lineages, including fungi. The impact of recurrent introgression …
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