De novo mutations in regulatory elements in neurodevelopmental disorders

PJ Short, JF McRae, G Gallone, A Sifrim, H Won… - Nature, 2018 - nature.com
We previously estimated that 42% of patients with severe developmental disorders carry
pathogenic de novo mutations in coding sequences. The role of de novo mutations in …

Large-scale discovery of novel genetic causes of developmental disorders

Nature, 2015 - nature.com
Despite three decades of successful, predominantly phenotype-driven discovery of the
genetic causes of monogenic disorders, up to half of children with severe developmental …

Prevalence and architecture of de novo mutations in developmental disorders

Nature, 2017 - nature.com
The genomes of individuals with severe, undiagnosed developmental disorders are
enriched in damaging de novo mutations (DNMs) in developmentally important genes. Here …

Common genetic variants contribute to risk of rare severe neurodevelopmental disorders

MEK Niemi, HC Martin, DL Rice, G Gallone, S Gordon… - Nature, 2018 - nature.com
There are thousands of rare human disorders that are caused by single deleterious, protein-
coding genetic variants. However, patients with the same genetic defect can have different …

An atlas of gene regulatory elements in adult mouse cerebrum

YE Li, S Preissl, X Hou, Z Zhang, K Zhang, Y Qiu… - Nature, 2021 - nature.com
The mammalian cerebrum performs high-level sensory perception, motor control and
cognitive functions through highly specialized cortical and subcortical structures. Recent …

[HTML][HTML] Conserved and divergent gene regulatory programs of the mammalian neocortex

NR Zemke, EJ Armand, W Wang, S Lee, J Zhou, YE Li… - Nature, 2023 - nature.com
Divergence of cis-regulatory elements drives species-specific traits, but how this manifests in
the evolution of the neocortex at the molecular and cellular level remains unclear. Here we …

Evidence for 28 genetic disorders discovered by combining healthcare and research data

J Kaplanis, KE Samocha, L Wiel, Z Zhang, KJ Arvai… - Nature, 2020 - nature.com
De novo mutations in protein-coding genes are a well-established cause of developmental
disorders. However, genes known to be associated with developmental disorders account …

Single-cell genome sequencing of human neurons identifies somatic point mutation and indel enrichment in regulatory elements

LJ Luquette, MB Miller, Z Zhou, CL Bohrson, Y Zhao… - Nature …, 2022 - nature.com
Accurate somatic mutation detection from single-cell DNA sequencing is challenging due to
amplification-related artifacts. To reduce this artifact burden, an improved amplification …

Neurodevelopmental disease genes implicated by de novo mutation and copy number variation morbidity

BP Coe, HAF Stessman, A Sulovari, MR Geisheker… - Nature …, 2019 - nature.com
We combined de novo mutation (DNM) data from 10,927 individuals with developmental
delay and autism to identify 253 candidate neurodevelopmental disease genes with an …

Refining the role of de novo protein-truncating variants in neurodevelopmental disorders by using population reference samples

JA Kosmicki, KE Samocha, DP Howrigan, SJ Sanders… - Nature …, 2017 - nature.com
Recent research has uncovered an important role for de novo variation in
neurodevelopmental disorders. Using aggregated data from 9,246 families with autism …