Whole-genome single-cell copy number profiling from formalin-fixed paraffin-embedded samples

LG Martelotto, T Baslan, J Kendall, FC Geyer… - Nature medicine, 2017 - nature.com
A substantial proportion of tumors consist of genotypically distinct subpopulations of cancer
cells. This intratumor genetic heterogeneity poses a substantial challenge for the …

Spatial genomics maps the structure, nature and evolution of cancer clones

A Lomakin, J Svedlund, C Strell, M Gataric, A Shmatko… - Nature, 2022 - nature.com
Genome sequencing of cancers often reveals mosaics of different subclones present in the
same tumour,–. Although these are believed to arise according to the principles of somatic …

Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution

SP Shah, RD Morin, J Khattra, L Prentice, T Pugh… - Nature, 2009 - nature.com
Recent advances in next generation sequencing,,, have made it possible to precisely
characterize all somatic coding mutations that occur during the development and …

Signatures of mutation and selection in the cancer genome

GR Bignell, CD Greenman, H Davies, AP Butler… - Nature, 2010 - nature.com
The cancer genome is moulded by the dual processes of somatic mutation and selection.
Homozygous deletions in cancer genomes occur over recessive cancer genes, where they …

The clonal and mutational evolution spectrum of primary triple-negative breast cancers

SP Shah, A Roth, R Goya, A Oloumi, G Ha, Y Zhao… - Nature, 2012 - nature.com
Primary triple-negative breast cancers (TNBCs), a tumour type defined by lack of oestrogen
receptor, progesterone receptor and ERBB2 gene amplification, represent approximately …

Somatic mutation landscapes at single-molecule resolution

F Abascal, LMR Harvey, E Mitchell, ARJ Lawson… - Nature, 2021 - nature.com
Somatic mutations drive the development of cancer and may contribute to ageing and other
diseases,. Despite their importance, the difficulty of detecting mutations that are only present …

Punctuated copy number evolution and clonal stasis in triple-negative breast cancer

R Gao, A Davis, TO McDonald, E Sei, X Shi, Y Wang… - Nature …, 2016 - nature.com
Aneuploidy is a hallmark of breast cancer; however, knowledge of how these complex
genomic rearrangements evolve during tumorigenesis is limited. In this study, we developed …

[HTML][HTML] Single-cell genomic variation induced by mutational processes in cancer

T Funnell, CH O'Flanagan, MJ Williams, A McPherson… - Nature, 2022 - nature.com
How cell-to-cell copy number alterations that underpin genomic instability in human cancers
drive genomic and phenotypic variation, and consequently the evolution of cancer, remains …

Genome evolution during progression to breast cancer

DE Newburger, D Kashef-Haghighi, Z Weng… - Genome …, 2013 - genome.cshlp.org
Cancer evolution involves cycles of genomic damage, epigenetic deregulation, and
increased cellular proliferation that eventually culminate in the carcinoma phenotype. Early …

[引用][C] Pan-cancer analysis of whole genomes.

S Hirano, L Yang, M Juul, CA Purdie… - …, 2020 - W190 Hochdurchsatz …