[HTML][HTML] Patterns of somatic structural variation in human cancer genomes

Y Li, ND Roberts, JA Wala, O Shapira, SE Schumacher… - Nature, 2020 - nature.com
A key mutational process in cancer is structural variation, in which rearrangements delete,
amplify or reorder genomic segments that range in size from kilobases to whole …

The evolutionary history of 2,658 cancers

M Gerstung, C Jolly, I Leshchiner, SC Dentro… - Nature, 2020 - nature.com
Cancer develops through a process of somatic evolution,. Sequencing data from a single
biopsy represent a snapshot of this process that can reveal the timing of specific genomic …

Recurrent and functional regulatory mutations in breast cancer

E Rheinbay, P Parasuraman, J Grimsby, G Tiao… - Nature, 2017 - nature.com
Genomic analysis of tumours has led to the identification of hundreds of cancer genes on the
basis of the presence of mutations in protein-coding regions. By contrast, much less is …

Cell-of-origin chromatin organization shapes the mutational landscape of cancer

P Polak, R Karlić, A Koren, R Thurman, R Sandstrom… - Nature, 2015 - nature.com
Cancer is a disease potentiated by mutations in somatic cells. Cancer mutations are not
distributed uniformly along the human genome. Instead, different human genomic regions …

Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution

P Eirew, A Steif, J Khattra, G Ha, D Yap, H Farahani… - Nature, 2015 - nature.com
Human cancers, including breast cancers, comprise clones differing in mutation content.
Clones evolve dynamically in space and time following principles of Darwinian evolution …

Discovery and saturation analysis of cancer genes across 21 tumour types

MS Lawrence, P Stojanov, CH Mermel, JT Robinson… - Nature, 2014 - nature.com
Although a few cancer genes are mutated in a high proportion of tumours of a given type (>
20%), most are mutated at intermediate frequencies (2–20%). To explore the feasibility of …

Signatures of copy number alterations in human cancer

CD Steele, A Abbasi, SMA Islam, AL Bowes… - Nature, 2022 - nature.com
Gains and losses of DNA are prevalent in cancer and emerge as a consequence of inter-
related processes of replication stress, mitotic errors, spindle multipolarity and breakage …

Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing

S Aganezov, S Goodwin, RM Sherman… - Genome …, 2020 - genome.cshlp.org
Improved identification of structural variants (SVs) in cancer can lead to more targeted and
effective treatment options as well as advance our basic understanding of the disease and …

Barcoding reveals complex clonal dynamics of de novo transformed human mammary cells

LV Nguyen, D Pellacani, S Lefort, N Kannan, T Osako… - Nature, 2015 - nature.com
Most human breast cancers have diversified genomically and biologically by the time they
become clinically evident,,. Early events involved in their genesis and the cellular context in …

Comprehensive molecular portraits of human breast tumours

We analysed primary breast cancers by genomic DNA copy number arrays, DNA
methylation, exome sequencing, messenger RNA arrays, microRNA sequencing and …