Efficient algorithms for calculating epistatic genomic relationship matrices
The genomic relationship matrix plays a key role in the analysis of genetic diversity, genomic
prediction, and genome-wide association studies. The epistatic genomic relationship matrix …
prediction, and genome-wide association studies. The epistatic genomic relationship matrix …
[HTML][HTML] On the approximation of interaction effect models by Hadamard powers of the additive genomic relationship
JWR Martini, FH Toledo, J Crossa - Theoretical population biology, 2020 - Elsevier
Whole genome epistasis models with interactions between different loci can be
approximated by genomic relationship models based on Hadamard powers of the additive …
approximated by genomic relationship models based on Hadamard powers of the additive …
Epistasis and covariance: how gene interaction translates into genomic relationship
Key message Models based on additive marker effects and on epistatic interactions can be
translated into genomic relationship models. This equivalence allows to perform predictions …
translated into genomic relationship models. This equivalence allows to perform predictions …
Efficient calculation of the genomic relationship matrix
M Schlather - BioRxiv, 2020 - biorxiv.org
Efficient Calculation of the Genomic Relationship Matrix | bioRxiv Skip to main content
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A genealogical estimate of genetic relationships
C Fan, N Mancuso, CWK Chiang - The American Journal of Human …, 2022 - cell.com
The application of genetic relationships among individuals, characterized by a genetic
relationship matrix (GRM), has far-reaching effects in human genetics. However, the current …
relationship matrix (GRM), has far-reaching effects in human genetics. However, the current …
Inversion of a part of the numerator relationship matrix using pedigree information
Background In recent theoretical developments, the information available (eg genotypes)
divides the original population into two groups: animals with this information (selected …
divides the original population into two groups: animals with this information (selected …
AGHmatrix: genetic relationship matrices in R
Motivation The resemble between relatives computed from pedigree and genomic data is an
important resource for geneticists and ecologists, who are interested in understanding how …
important resource for geneticists and ecologists, who are interested in understanding how …
Generalized genomic distance–based regression methodology for multilocus association analysis
J Wessel, NJ Schork - The American Journal of Human Genetics, 2006 - cell.com
Large-scale, multilocus genetic association studies require powerful and appropriate
statistical-analysis tools that are designed to relate genotype and haplotype information to …
statistical-analysis tools that are designed to relate genotype and haplotype information to …
EpiSIM: simulation of multiple epistasis, linkage disequilibrium patterns and haplotype blocks for genome-wide interaction analysis
Epistasis is a ubiquitous phenomenon in genetics, and is considered to be one of the main
factors in current efforts to detect missing heritability for complex diseases. Simulation is a …
factors in current efforts to detect missing heritability for complex diseases. Simulation is a …
GVCHAP: a computing pipeline for genomic prediction and variance component estimation using haplotypes and SNP markers
D Prakapenka, C Wang, Z Liang, C Bian, C Tan… - Frontiers in …, 2020 - frontiersin.org
Haplotype prediction models open many possibilities to improve the accuracy of genomic
selection but require more data processing and computing time than single-SNP prediction …
selection but require more data processing and computing time than single-SNP prediction …