Ensembl variation resources
Y Chen, F Cunningham, D Rios, WM McLaren, J Smith… - BMC genomics, 2010 - Springer
Background The maturing field of genomics is rapidly increasing the number of sequenced
genomes and producing more information from those previously sequenced. Much of this …
genomes and producing more information from those previously sequenced. Much of this …
Efficient querying of genomic reference databases with gget
L Luebbert, L Pachter - Bioinformatics, 2023 - academic.oup.com
Motivation A recurring challenge in interpreting genomic data is the assessment of results in
the context of existing reference databases. With the increasing number of command line …
the context of existing reference databases. With the increasing number of command line …
Current status and new features of the Consensus Coding Sequence database
CM Farrell, NA O'Leary, RA Harte… - Nucleic acids …, 2014 - academic.oup.com
Abstract The Consensus Coding Sequence (CCDS) project (http://www. ncbi. nlm. nih.
gov/CCDS/) is a collaborative effort to maintain a dataset of protein-coding regions that are …
gov/CCDS/) is a collaborative effort to maintain a dataset of protein-coding regions that are …
Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation
S Pujar, NA O'Leary, CM Farrell… - Nucleic Acids …, 2018 - academic.oup.com
Abstract The Consensus Coding Sequence (CCDS) project provides a dataset of protein-
coding regions that are identically annotated on the human and mouse reference genome …
coding regions that are identically annotated on the human and mouse reference genome …
GENCODE: reference annotation for the human and mouse genomes in 2023
GENCODE produces high quality gene and transcript annotation for the human and mouse
genomes. All GENCODE annotation is supported by experimental data and serves as a …
genomes. All GENCODE annotation is supported by experimental data and serves as a …
The Ensembl genome database project
Abstract The Ensembl (http://www. ensembl. org/) database project provides a bioinformatics
framework to organise biology around the sequences of large genomes. It is a …
framework to organise biology around the sequences of large genomes. It is a …
The Ensembl analysis pipeline
SC Potter, L Clarke, V Curwen, S Keenan… - Genome …, 2004 - genome.cshlp.org
The Ensembl pipeline is an extension to the Ensembl system which allows automated
annotation of genomic sequence. The software comprises two parts. First, there is a set of …
annotation of genomic sequence. The software comprises two parts. First, there is a set of …
Alliance of Genome Resources Portal: unified model organism research platform
Nucleic acids research, 2020 - academic.oup.com
Abstract The Alliance of Genome Resources (Alliance) is a consortium of the major model
organism databases and the Gene Ontology that is guided by the vision of facilitating …
organism databases and the Gene Ontology that is guided by the vision of facilitating …
Ensembl 2008
Abstract The Ensembl project (http://www. ensembl. org) is a comprehensive genome
information system featuring an integrated set of genome annotation, databases and other …
information system featuring an integrated set of genome annotation, databases and other …