Predicted residual error sum of squares of mixed models: an application for genomic prediction

S Xu - G3: Genes, Genomes, Genetics, 2017 - academic.oup.com
Genomic prediction is a statistical method to predict phenotypes of polygenic traits using
high-throughput genomic data. Most diseases and behaviors in humans and animals are …

A nested mixture model for genomic prediction using whole-genome SNP genotypes

J Zeng, D Garrick, J Dekkers, R Fernando - PLoS One, 2018 - journals.plos.org
Genomic prediction exploits single nucleotide polymorphisms (SNPs) across the whole
genome for predicting genetic merit of selection candidates. In most models for genomic …

Genome-enabled prediction methods based on machine learning

EL Reinoso-Peláez, D Gianola… - Genomic prediction of …, 2022 - Springer
Growth of artificial intelligence and machine learning (ML) methodology has been explosive
in recent years. In this class of procedures, computers get knowledge from sets of …

Influence of genetic interactions on polygenic prediction

Z Dai, N Long, W Huang - G3: Genes, Genomes, Genetics, 2020 - academic.oup.com
Prediction of phenotypes from genotypes is an important objective to fulfill the promises of
genomics, precision medicine and agriculture. Although it's now possible to account for the …

A computationally efficient algorithm for genomic prediction using a Bayesian model

T Wang, YPP Chen, ME Goddard… - Genetics Selection …, 2015 - Springer
Background Genomic prediction of breeding values from dense single nucleotide
polymorphisms (SNP) genotypes is used for livestock and crop breeding, and can also be …

HIBLUP: an integration of statistical models on the BLUP framework for efficient genetic evaluation using big genomic data

L Yin, H Zhang, Z Tang, D Yin, Y Fu, X Yuan… - Nucleic acids …, 2023 - academic.oup.com
Human diseases and agricultural traits can be predicted by modeling a genetic random
polygenic effect in linear mixed models. To estimate variance components and predict …

Prediction of complex human traits using the genomic best linear unbiased predictor

G de Los Campos, AI Vazquez, R Fernando… - PLoS …, 2013 - journals.plos.org
Despite important advances from Genome Wide Association Studies (GWAS), for most
complex human traits and diseases, a sizable proportion of genetic variance remains …

Fast genomic predictions via Bayesian G-BLUP and multilocus models of threshold traits including censored Gaussian data

HP Kärkkäinen, MJ Sillanpää - G3: Genes, Genomes, Genetics, 2013 - academic.oup.com
Because of the increased availability of genome-wide sets of molecular markers along with
reduced cost of genotyping large samples of individuals, genomic estimated breeding …

Genomic prediction accounting for residual heteroskedasticity

Z Ou, RJ Tempelman, JP Steibel… - G3: Genes …, 2016 - academic.oup.com
Whole-genome prediction (WGP) models that use single-nucleotide polymorphism marker
information to predict genetic merit of animals and plants typically assume homogeneous …

Genomic prediction including SNP-specific variance predictors

EF Mouresan, M Selle… - G3: Genes, Genomes …, 2019 - academic.oup.com
The increasing amount of available biological information on the markers can be used to
inform the models applied for genomic selection to improve predictions. The objective of this …