Rice co-expression network analysis identifies gene modules associated with agronomic traits
Y Zhang, E Han, Y Peng, Y Wang, Y Wang… - Plant …, 2022 - academic.oup.com
Identifying trait-associated genes is critical for rice (Oryza sativa) improvement, which
usually relies on map-based cloning, quantitative trait locus analysis, or genome-wide …
usually relies on map-based cloning, quantitative trait locus analysis, or genome-wide …
Rice Expression Database (RED): An integrated RNA-Seq-derived gene expression database for rice
Rice is one of the most important stable food as well as a monocotyledonous model
organism for the plant research community. Here, we present RED (Rice Expression …
organism for the plant research community. Here, we present RED (Rice Expression …
Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice
K Yano, E Yamamoto, K Aya, H Takeuchi, P Lo, L Hu… - Nature …, 2016 - nature.com
A genome-wide association study (GWAS) can be a powerful tool for the identification of
genes associated with agronomic traits in crop species, but it is often hindered by population …
genes associated with agronomic traits in crop species, but it is often hindered by population …
CARMO: a comprehensive annotation platform for functional exploration of rice multi‐omics data
High‐throughput technology is gradually becoming a powerful tool for routine research in
rice. Interpretation of biological significance from the huge amount of data is a critical but …
rice. Interpretation of biological significance from the huge amount of data is a critical but …
Identification of key genes for the ultrahigh yield of rice using dynamic cross-tissue network analysis
J Hu, T Zeng, Q Xia, L Huang, Y Zhang… - Genomics …, 2020 - academic.oup.com
Significantly increasing crop yield is a major and worldwide challenge for food supply and
security. It is well-known that rice cultivated at Taoyuan in Yunnan of China can produce the …
security. It is well-known that rice cultivated at Taoyuan in Yunnan of China can produce the …
[HTML][HTML] Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa
Asian rice, Oryza sativa is a cultivated, inbreeding species that feeds over half of the world's
population. Understanding the genetic basis of diverse physiological, developmental, and …
population. Understanding the genetic basis of diverse physiological, developmental, and …
Analysis of trait heritability in functionally partitioned rice genomes
Abstract Knowledge of the genetic architecture of importantly agronomical traits can speed
up genetic improvement in cultivated rice (Oryza sativa L.). Many recent investigations have …
up genetic improvement in cultivated rice (Oryza sativa L.). Many recent investigations have …
[HTML][HTML] Rice functional genomics research: past decade and future
Y Li, J Xiao, L Chen, X Huang, Z Cheng, B Han… - Molecular plant, 2018 - cell.com
Rice (Oryza sativa) is a major staple food crop for more than 3.5 billion people worldwide.
Understanding the regulatory mechanisms of complex agronomic traits in rice is critical for …
Understanding the regulatory mechanisms of complex agronomic traits in rice is critical for …
[HTML][HTML] A pangenome analysis pipeline provides insights into functional gene identification in rice
Background A pangenome aims to capture the complete genetic diversity within a species
and reduce bias in genetic analysis inherent in using a single reference genome. However …
and reduce bias in genetic analysis inherent in using a single reference genome. However …
RiceFREND: a platform for retrieving coexpressed gene networks in rice
Y Sato, N Namiki, H Takehisa, K Kamatsuki… - Nucleic acids …, 2013 - academic.oup.com
Similarity of gene expression across a wide range of biological conditions can be efficiently
used in characterization of gene function. We have constructed a rice gene coexpression …
used in characterization of gene function. We have constructed a rice gene coexpression …