Reconstructing Denisovan anatomy using DNA methylation maps

D Gokhman, N Mishol, M de Manuel, D de Juan… - Cell, 2019 - cell.com
Denisovans are an extinct group of humans whose morphology remains unknown. Here, we
present a method for reconstructing skeletal morphology using DNA methylation patterns …

Reconstructing the DNA methylation maps of the Neandertal and the Denisovan

D Gokhman, E Lavi, K Prüfer, MF Fraga, JA Riancho… - science, 2014 - science.org
Ancient DNA sequencing has recently provided high-coverage archaic human genomes.
However, the evolution of epigenetic regulation along the human lineage remains largely …

Differential DNA methylation of vocal and facial anatomy genes in modern humans

D Gokhman, M Nissim-Rafinia, L Agranat-Tamir… - Nature …, 2020 - nature.com
Abstract Changes in potential regulatory elements are thought to be key drivers of
phenotypic divergence. However, identifying changes to regulatory elements that underlie …

The combined landscape of Denisovan and Neanderthal ancestry in present-day humans

S Sankararaman, S Mallick, N Patterson, D Reich - Current Biology, 2016 - cell.com
Some present-day humans derive up to∼ 5%[1] of their ancestry from archaic Denisovans,
an even larger proportion than the∼ 2% from Neanderthals [2]. We developed methods that …

Comparative methylome analyses identify epigenetic regulatory loci of human brain evolution

I Mendizabal, L Shi, TE Keller… - Molecular biology …, 2016 - academic.oup.com
How do epigenetic modifications change across species and how do these modifications
affect evolution? These are fundamental questions at the forefront of our evolutionary …

Inferring past environments from ancient epigenomes

D Gokhman, A Malul, L Carmel - Molecular Biology and …, 2017 - academic.oup.com
Analyzing the conditions in which past individuals lived is key to understanding the
environments and cultural transitions to which humans had to adapt. Here, we suggest a …

Epigenomic modifications in modern and ancient genomes

L Niiranen, D Leciej, H Edlund, C Bernhardsson… - Genes, 2022 - mdpi.com
Epigenetic changes have been identified as a major driver of fundamental metabolic
pathways. More specifically, the importance of epigenetic regulatory mechanisms for …

Dynamics of DNA methylation in recent human and great ape evolution

I Hernando-Herraez, J Prado-Martinez, P Garg… - PLoS …, 2013 - journals.plos.org
DNA methylation is an epigenetic modification involved in regulatory processes such as cell
differentiation during development, X-chromosome inactivation, genomic imprinting and …

Divergent whole-genome methylation maps of human and chimpanzee brains reveal epigenetic basis of human regulatory evolution

J Zeng, G Konopka, BG Hunt, TM Preuss… - The American Journal of …, 2012 - cell.com
DNA methylation is a pervasive epigenetic DNA modification that strongly affects chromatin
regulation and gene expression. To date, it remains largely unknown how patterns of DNA …

Comparative analysis reveals epigenomic evolution related to species traits and genomic imprinting in mammals

Y Hu, S Yuan, X Du, J Liu, W Zhou, F Wei - The Innovation, 2023 - cell.com
DNA methylation is an epigenetic modification that plays a crucial role in various regulatory
processes, including gene expression regulation, transposable element repression, and …