Enviromic-based kernels may optimize resource allocation with multi-trait multi-environment genomic prediction for tropical Maize
R Gevartosky, HF Carvalho, G Costa-Neto… - BMC Plant …, 2023 - Springer
Background Success in any genomic prediction platform is directly dependent on
establishing a representative training set. This is a complex task, even in single-trait single …
establishing a representative training set. This is a complex task, even in single-trait single …
Using machine learning to combine genetic and environmental data for maize grain yield predictions across multi-environment trials
Key message Incorporating feature-engineered environmental data into machine learning-
based genomic prediction models is an efficient approach to indirectly model genotype-by …
based genomic prediction models is an efficient approach to indirectly model genotype-by …
Genomic-enabled prediction in maize using kernel models with genotype× environment interaction
M Bandeira e Sousa, J Cuevas… - G3: Genes …, 2017 - academic.oup.com
Multi-environment trials are routinely conducted in plant breeding to select candidates for
the next selection cycle. In this study, we compare the prediction accuracy of four developed …
the next selection cycle. In this study, we compare the prediction accuracy of four developed …
Boosting predictive ability of tropical maize hybrids via genotype‐by‐environment interaction under multivariate GBLUP models
M Dalsente Krause, KOG Dias… - Crop …, 2020 - Wiley Online Library
Genomic selection has been implemented in several plant and animal breeding programs
and it has proven to improve efficiency and maximize genetic gains. Phenotypic data of …
and it has proven to improve efficiency and maximize genetic gains. Phenotypic data of …
Integration of Dominance and Marker × Environment Interactions into Maize Genomic Prediction Models
LF Ventorim Ferrão, CD Marinho, PR Munoz… - Biorxiv, 2018 - biorxiv.org
Hybrid breeding programs are driven by the potential to explore the heterosis phenomenon
in traits with non-additive inheritance. Traditionally, progress has been achieved by crossing …
in traits with non-additive inheritance. Traditionally, progress has been achieved by crossing …
Genomic prediction applied to multiple traits and environments in second season maize hybrids
AA de Oliveira, MFR Resende Jr, LFV Ferrão… - Heredity, 2020 - nature.com
Genomic selection has become a reality in plant breeding programs with the reduction in
genotyping costs. Especially in maize breeding programs, it emerges as a promising tool for …
genotyping costs. Especially in maize breeding programs, it emerges as a promising tool for …
Prediction of maize phenotypic traits with genomic and environmental predictors using gradient boosting frameworks
CC Westhues, GS Mahone, S da Silva… - Frontiers in plant …, 2021 - frontiersin.org
The development of crop varieties with stable performance in future environmental
conditions represents a critical challenge in the context of climate change. Environmental …
conditions represents a critical challenge in the context of climate change. Environmental …
[PDF][PDF] Environment-specific genomic prediction ability in maize using environmental covariates depends on environmental similarity to training data
AR Rogers, JB Holland - G3, 2022 - academic.oup.com
Technology advances have made possible the collection of a wealth of genomic,
environmental, and phenotypic data for use in plant breeding. Incorporation of …
environmental, and phenotypic data for use in plant breeding. Incorporation of …
Nonlinear kernels, dominance, and envirotyping data increase the accuracy of genome-based prediction in multi-environment trials
Modern whole-genome prediction (WGP) frameworks that focus on multi-environment trials
(MET) integrate large-scale genomics, phenomics, and envirotyping data. However, the …
(MET) integrate large-scale genomics, phenomics, and envirotyping data. However, the …
Enhancing winter wheat prediction with genomics, phenomics and environmental data
In the realm of multi-environment prediction, when the goal is to predict a complete
environment using the others as a training set, the efficiency of genomic selection (GS) falls …
environment using the others as a training set, the efficiency of genomic selection (GS) falls …