[HTML][HTML] The 4D nucleome: Evidence for a dynamic nuclear landscape based on co-aligned active and inactive nuclear compartments

T Cremer, M Cremer, B Hübner, H Strickfaden… - FEBS letters, 2015 - Elsevier
Recent methodological advancements in microscopy and DNA sequencing-based methods
provide unprecedented new insights into the spatio-temporal relationships between …

Functional nuclear organization of transcription and DNA replication a topographical marriage between chromatin domains and the interchromatin compartment

Y Markaki, M Gunkel, L Schermelleh… - Cold Spring Harbor …, 2010 - symposium.cshlp.org
We studied the nuclear topography of RNA transcription and DNA replication in mammalian
cell types with super-resolution fluorescence microscopy, which offers a resolution beyond …

Chromosome territories, interchromatin domain compartment, and nuclear matrix: an integrated view of the functional nuclear architecture

T Cremer, G Kreth, H Koester, RHA Fink… - Critical Reviews™ in …, 2000 - dl.begellhouse.com
Advances in the specific fluorescent labeling of chromatin in fixed and living human cells in
combination with three-dimensional (3D) and 4D (space plus time) fluorescence microscopy …

Revealing the high-resolution three-dimensional network of chromatin and interchromatin space: a novel electron-microscopic approach to reconstructing nuclear …

J Rouquette, C Genoud, GH Vazquez-Nin, B Kraus… - Chromosome …, 2009 - Springer
The nuclear architecture is considered an important contributor to genome function.
Although the fine structural features of the cell nucleus have been investigated extensively …

The functional architecture of the nucleus as analysed by ultrastructural cytochemistry

S Fakan - Histochemistry and cell biology, 2004 - Springer
Ultrastructural cytochemistry has been, for many years now, a major tool for investigating
structure–function relationships in the cell nucleus. It has been essential in approaching the …

The 4D nucleome project

J Dekker, AS Belmont, M Guttman, VO Leshyk, JT Lis… - Nature, 2017 - nature.com
Abstract The 4D Nucleome Network aims to develop and apply approaches to map the
structure and dynamics of the human and mouse genomes in space and time with the goal …

Super-resolution in situ analysis of active ribosomal DNA chromatin organization in the nucleolus

A Maiser, S Dillinger, G Längst, L Schermelleh… - Scientific Reports, 2020 - nature.com
Ribosomal RNA (rRNA) transcription by RNA polymerase I (Pol I) is the first key step of
ribosome biogenesis. While the molecular mechanisms of rRNA transcription regulation …

Nuclear compartments: an incomplete primer to nuclear compartments, bodies, and genome organization relative to nuclear architecture

AS Belmont - Cold Spring Harbor perspectives in biology, 2022 - cshperspectives.cshlp.org
This work reviews nuclear compartments, defined broadly to include distinct nuclear
structures, bodies, and chromosome domains. It first summarizes original cytological …

Dynamics and interplay of nuclear architecture, genome organization, and gene expression

R Schneider, R Grosschedl - Genes & development, 2007 - genesdev.cshlp.org
The organization of the genome in the nucleus of a eukaryotic cell is fairly complex and
dynamic. Various features of the nuclear architecture, including compartmentalization of …

The 4D nucleome: genome compartmentalization in an evolutionary context

T Cremer, M Cremer, C Cremer - Biochemistry (Moscow), 2018 - Springer
Abstract 4D nucleome research aims to understand the impact of nuclear organization in
space and time on nuclear functions, such as gene expression patterns, chromatin …