Nucleosides and nucleotides. Part 226: Alternate-strand triple-helix formation by 3′-3′-linked oligodeoxynucleotides composed of asymmetrical sequences

S Hoshika, Y Ueno, H Kamiya, A Matsuda - Bioorganic & medicinal …, 2004 - Elsevier
In this paper, we describe the synthesis of the 3′-3′-linked oligonucleotides connected
with pentaerythritol composed of asymmetrical sequences. Stability of the triplexes between …

Double-stranded oligonucleotides containing 5-aminomethyl-2′-deoxyuridine form thermostable anti-parallel triplexes with single-stranded DNA or RNA

A Shibata, Y Ueno, M Iwata, H Wakita… - Bioorganic & medicinal …, 2012 - Elsevier
This Letter describes the synthesis and properties of double-stranded antisense
oligonucleotides connected with a pentaerythritol linker. We found that double-stranded …

Synthesis and Triplex‐Forming Properties of Cyclic Oligonucleotides with (G, A)‐Antiparallel Strands

MG Grimau, A Aviñó, R Gargallo… - Chemistry & …, 2005 - Wiley Online Library
Cyclic oligonucleotides carrying an oligopurine Watson–Crick sequence linked to the
corresponding (G, A)‐and (G, T)‐antiparallel strands were prepared by nonenzymatic …

Nucleosides and Nucleotides. 218. Alternate-Strand Triple-Helix Formation by the 3 '-3 '-Linked Oligodeoxynucleotides Using a Purine Motif

S Hoshika, Y Ueno, A Matsuda - Bioconjugate chemistry, 2003 - ACS Publications
In this paper, we describe the synthesis of the 3 '-3 '-linked TFOs that can form the
antiparallel triplexes with the duplex DNA target by reverse Hoogsteen hydrogen bonds …

Triplex-forming ability of modified oligonucleotides

TH⊘ jland, BR Babu, T Bryld… - … , Nucleotides, and Nucleic …, 2007 - Taylor & Francis
We present our studies on the ability of several different nucleotide analogs as triplex-
forming oligonucleotides. The modifications tested include 4′-C-hydroxymethyl, LNA, 2 …

Synthesis of 3 '-3 '-Linked Oligonucleotides Branched by a Pentaerythritol Linker and the Thermal Stabilities of the Triplexes with Single-Stranded DNA or RNA

Y Ueno, A Shibata, A Matsuda, Y Kitade - Bioconjugate chemistry, 2003 - ACS Publications
Synthesis of 3 '-3 '-linked oligonucleotides branched by a pentaerythritol linker is described.
The branched oligonucleotides were synthesized on a DNA/RNA synthesizer using a …

2′-O, 4′-C-Methylene bridged nucleic acid (2′, 4′-BNA): synthesis and triplex-forming properties

S Obika, T Uneda, T Sugimoto, D Nanbu… - Bioorganic & medicinal …, 2001 - Elsevier
For development of ideal antisense and antigene molecules, various chemical modifications
of oligonucleotides have been studied. However, despite their importance, there is only …

Recognition of alternating oligopurine/oligopyrimidine tracts of DNA by oligonucleotides with base-to-base linkages

BW Zhou, C Marchand, U Asseline… - Bioconjugate …, 1995 - ACS Publications
A new concept is presented to design and synthesize modified oligonucleotides in order to
extend the range of double-helical DNA sequences that can be recognized by …

Stabilization of DNA triplexes by dangling aromatic residues

M Kubota, A Ono - Tetrahedron letters, 2004 - Elsevier
Novel nucleoside analogues containing 2′-deoxyinosine and aromatic rings, which are
connected by short linker groups, were synthesized and incorporated into …

Novel 2′-deoxycytidine analogues as pH independent substitutes of protonated cytosines in triple helix forming oligonucleotides

E Bédu, R Benhida, M Devys, JL Fourrey - Tetrahedron letters, 1999 - Elsevier
The N-acetyl derivatives 1a and 2a of the aminotriazole and aminoimidazole 2′-
deoxynucleosides 1 and 2 were synthesized as potential substitutes of protonated 2 …