ppGpp regulates the binding of two RNA polymerase molecules to the tyrT promoter

AA Travers, AI Lamond, HAF Mace - Nucleic Acids Research, 1982 - academic.oup.com
Bacterial promoters differ in the number of RNA polymerase molecules that bind to form a
filterable polymerase-promoter complex. We show that two holoenzyme molecules interact …

Reorganisation of an RNA polymerase–promoter DNA complex for DNA melting

PC Burrows, K Severinov, M Buck… - The EMBO …, 2004 - embopress.org
Sigma factors, the key regulatory components of the bacterial RNA polymerase (RNAP),
direct promoter DNA binding and DNA melting. The σ54‐RNAP forms promoter complexes …

Functions of the ς54 Region I in trans and implications for transcription activation

MT Gallegos, WV Cannon, M Buck - Journal of Biological Chemistry, 1999 - ASBMB
Control of transcription frequently involves the direct interaction of activators with RNA
polymerase. In bacteria, the formation of stable open promoter complexes by the ς 54 RNA …

Interactions of Escherichia coli σ70 within the transcription elongation complex

SS Daube, PH Von Hippel - Proceedings of the National …, 1999 - National Acad Sciences
A functional transcription elongation complex can be formed without passing through a
promoter by adding a complementary RNA primer and core Escherichia coli RNA …

A regulatory protein that interferes with activator-stimulated transcription in bacteria

S Nakano, MM Nakano, Y Zhang… - Proceedings of the …, 2003 - National Acad Sciences
Transcriptional activator proteins in bacteria often operate by interaction with the C-terminal
domain of the α-subunit of RNA polymerase (RNAP). Here we report the discovery of an …

Structural basis of the nucleotide driven conformational changes in the AAA+ domain of transcription activator PspF

M Rappas, J Schumacher, H Niwa, M Buck… - Journal of molecular …, 2006 - Elsevier
Bacterial enhancer-binding proteins (EBP) activate transcription by hydrolyzing ATP to
restructure the σ54-RNA polymerase–promoter complex. We compare six high resolution …

A stressed intermediate in the formation of stably initiated RNA chains at the Escherichia coli lac UV5 promoter

DC Straney, DM Crothers - Journal of molecular biology, 1987 - Elsevier
We report experiments designed to elucidate the mechanism by which RNA polymerase
advances from the open complex to synthesis of a stably bound RNA chain during …

The sigma 54 DNA‐binding domain includes a determinant of enhancer responsiveness

M Chaney, M Buck - Molecular microbiology, 1999 - Wiley Online Library
The bacterial σ54 protein associates with core RNA polymerase to form a holoenzyme that
functions in enhancer‐dependent transcription. Isomerization of the σ54 polymerase and its …

Sequences in σ54 Region I required for binding to early melted DNA and their involvement in sigma-DNA isomerisation

MT Gallegos, M Buck - Journal of molecular biology, 2000 - Elsevier
The bacterial σ54 RNA polymerase functions in a transcription activation mechanism that
fully relies upon nucleotide hydrolysis by an enhancer binding activator protein to stimulate …

Transcription activation by a variety of AraC/XylS family activators does not depend on the class II-specific activation determinant in the N-terminal domain of the RNA …

SM Egan, AJ Pease, J Lang, X Li, V Rao… - Journal of …, 2000 - Am Soc Microbiol
The N-terminal domain of the RNA polymerase α subunit (α-NTD) was tested for a role in
transcription activation by a variety of AraC/XylS family members. Based on substitutions at …