[HTML][HTML] Computational modeling, formal analysis, and tools for systems biology
E Bartocci, P Lió - PLoS computational biology, 2016 - journals.plos.org
As the amount of biological data in the public domain grows, so does the range of modeling
and analysis techniques employed in systems biology. In recent years, a number of …
and analysis techniques employed in systems biology. In recent years, a number of …
Toward verified biological models
A Sadot, J Fisher, D Barak, Y Admanit… - … ACM transactions on …, 2008 - ieeexplore.ieee.org
The last several decades have witnessed a vast accumulation of biological data and data
analysis. Many of these data sets represent only a small fraction of the system's behavior …
analysis. Many of these data sets represent only a small fraction of the system's behavior …
Executable cell biology
J Fisher, TA Henzinger - Nature biotechnology, 2007 - nature.com
Computational modeling of biological systems is becoming increasingly important in efforts
to better understand complex biological behaviors. In this review, we distinguish between …
to better understand complex biological behaviors. In this review, we distinguish between …
[PDF][PDF] System modeling in cell biology from concepts to nuts and bolts
What is systems biology if all definitions of biology implicitly or explicitly refer to the study of a
whole object, whether it is a virus, a cell, a bacterium, a protozoan or a metazoan? We treat …
whole object, whether it is a virus, a cell, a bacterium, a protozoan or a metazoan? We treat …
[PDF][PDF] System modeling in cellular biology
What is systems biology if all definitions of biology implicitly or explicitly refer to the study of a
whole object, whether it is a virus, a cell, a bacterium, a protozoan or a metazoan? We treat …
whole object, whether it is a virus, a cell, a bacterium, a protozoan or a metazoan? We treat …
Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology
H Schmidt, M Jirstrand - Bioinformatics, 2006 - academic.oup.com
We present a Systems Biology Toolbox for the widely used general purpose mathematical
software MATLAB. The toolbox offers systems biologists an open and extensible …
software MATLAB. The toolbox offers systems biologists an open and extensible …
Systems biology: the next frontier for bioinformatics
Biochemical systems biology augments more traditional disciplines, such as genomics,
biochemistry and molecular biology, by championing (i) mathematical and computational …
biochemistry and molecular biology, by championing (i) mathematical and computational …
Model building and model checking for biochemical processes
A central claim of computational systems biology is that, by drawing on mathematical
approaches developed in the context of dynamic systems, kinetic analysis, computational …
approaches developed in the context of dynamic systems, kinetic analysis, computational …
Mathematical modeling of biological systems
S Motta, F Pappalardo - Briefings in Bioinformatics, 2013 - academic.oup.com
Mathematical and computational models are increasingly used to help interpret biomedical
data produced by high-throughput genomics and proteomics projects. The application of …
data produced by high-throughput genomics and proteomics projects. The application of …
Systems biology at the Institute for Systems Biology
Abstract Systems biology represents an experimental approach to biology that attempts to
study biological systems in a holistic rather than an atomistic manner. Ideally this involves …
study biological systems in a holistic rather than an atomistic manner. Ideally this involves …