Unravelling gene expression of complex crop genomes

RJA Buggs - Heredity, 2013 - nature.com
Standing between us and global food shortage are high yielding varieties of wheat, oilseed
rape, potato, maize and sugarcane. These come from diverse plant families, but share the …

Jeans, genes, and genomes: cotton as a model for studying polyploidy

JF Wendel, LE Flagel, KL Adams - Polyploidy and genome evolution, 2012 - Springer
We present an overview of the cotton genus (Gossypium) as a model for the study of
polyploidy. A synopsis of the origin and evolution of polyploid cotton is provided, offering an …

Does one subgenome become dominant in the formation and evolution of a polyploid?

C Liu, YG Wang - Annals of Botany, 2023 - academic.oup.com
Background Polyploids are common in flowering plants and they tend to have more
expanded ranges of distributions than their diploid progenitors. Possible mechanisms …

Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton

X Zhao, Y Si, RE Hanson, CF Crane, HJ Price… - Genome …, 1998 - genome.cshlp.org
Polyploid formation has played a major role in the evolution of many plant and animal
genomes; however, surprisingly little is known regarding the subsequent evolution of DNA …

Gene expression dominance in allopolyploids: hypotheses and models

S Bottani, NR Zabet, JF Wendel, RA Veitia - Trends in Plant Science, 2018 - cell.com
The classical example of nonadditive contributions of the two parents to allopolyploids is
nucleolar dominance, which entails silencing of one parental set of ribosomal RNA genes …

The impact of polyploidy on grass genome evolution

AA Levy, M Feldman - Plant physiology, 2002 - academic.oup.com
Polyploidy is an evolutionary process whereby two or more genomes are brought together
into the same nucleus, usually by hybridization followed by chromosome doubling. As a …

Regulatory controls of duplicated gene expression during fiber development in allotetraploid cotton

J You, Z Liu, Z Qi, Y Ma, M Sun, L Su, H Niu, Y Peng… - Nature …, 2023 - nature.com
Polyploidy complicates transcriptional regulation and increases phenotypic diversity in
organisms. The dynamics of genetic regulation of gene expression between coresident …

Polyploidy before and after domestication of crop species

T Akagi, K Jung, K Masuda, KK Shimizu - Current Opinion in Plant Biology, 2022 - Elsevier
Recent advances in the genomics of polyploid species answer some of the long-standing
questions about the role of polyploidy in crop species. Here, we summarize the current …

A criticism of the value of midparent in polyploidization

A Gianinetti - Journal of experimental botany, 2013 - academic.oup.com
The hypothesis of genetic additivity states that the effects of different alleles, or different
genes, add up to produce the phenotype. When considering the F1 progeny of a cross, the …

Extensive and Biased Intergenomic Nonreciprocal DNA Exchanges Shaped a Nascent Polyploid Genome, Gossypium (Cotton)

H Guo, X Wang, H Gundlach, KFX Mayer… - Genetics, 2014 - academic.oup.com
Genome duplication is thought to be central to the evolution of morphological complexity,
and some polyploids enjoy a variety of capabilities that transgress those of their diploid …