A phylogenetic analysis of indel dynamics in the cotton genus

CE Grover, Y Yu, RA Wing, AH Paterson… - … Biology and Evolution, 2008 - academic.oup.com
Genome size evolution is a dynamic process involving counterbalancing mechanisms
whose actions vary across lineages and over time. Whereas the primary mechanism of …

[HTML][HTML] Asymmetric evolution and domestication in allotetraploid cotton (Gossypium hirsutum L.)

L Fang, X Guan, T Zhang - The Crop Journal, 2017 - Elsevier
Polyploidy plays a major role in genome evolution, which corresponds to environmental
changes over millions of years. The mechanisms of genome evolution, particularly during …

Genomically biased accumulation of seed storage proteins in allopolyploid cotton

G Hu, NL Houston, D Pathak, L Schmidt, JJ Thelen… - Genetics, 2011 - academic.oup.com
Allopolyploidy is an important process during plant evolution that results in the reunion of
two divergent genomes into a common nucleus. Many of the immediate as well as longer …

Homoeologous exchanges cause extensive dosage‐dependent gene expression changes in an allopolyploid crop

A Lloyd, A Blary, D Charif, C Charpentier… - New …, 2018 - Wiley Online Library
Structural variation is a major source of genetic diversity and an important substrate for
selection. In allopolyploids, homoeologous exchanges (ie between the constituent …

Genome evolution in polyploids

JF Wendel - Plant molecular evolution, 2000 - Springer
Polyploidy is a prominent process in plants and has been significant in the evolutionary
history of vertebrates and other eukaryotes. In plants, interdisciplinary approaches …

Doubling down on genomes: polyploidy and crop plants

S Renny‐Byfield, JF Wendel - American journal of botany, 2014 - Wiley Online Library
Polyploidy, or whole genome multiplication, is ubiquitous among angiosperms. Many crop
species are relatively recent allopolyploids, resulting from interspecific hybridization and …

Novel patterns of gene expression in polyploid plants

KL Adams, JF Wendel - TRENDS in Genetics, 2005 - cell.com
Genome doubling, or polyploidy, is a major factor accounting for duplicate genes found in
most eukaryotic genomes. Polyploidy has considerable effects on duplicate gene …

Gene retention, fractionation and subgenome differences in polyploid plants

F Cheng, J Wu, X Cai, J Liang, M Freeling, X Wang - Nature plants, 2018 - nature.com
All natural plant species are evolved from ancient polyploids. Polyloidization plays an
important role in plant genome evolution, species divergence and crop domestication. We …

Polyploidy and its effect on evolutionary success: old questions revisited with new tools

A Madlung - Heredity, 2013 - nature.com
Polyploidy, the condition of possessing more than two complete genomes in a cell, has
intrigued biologists for almost a century. Polyploidy is found in many plants and some animal …

Genomic legacies of the progenitors and the evolutionary consequences of allopolyploidy

KA Steige, T Slotte - Current opinion in plant biology, 2016 - Elsevier
Highlights•Genomic legacies of the ancestors may affect duplicate gene evolution in
allopolyploids.•Duplicate gene loss in allopolyploids is often distinctly non …