Genome-wide association mapping in a rice MAGIC plus population detects QTLs and genes useful for biofortification

GIL Descalsota, BPM Swamy, H Zaw… - Frontiers in Plant …, 2018 - frontiersin.org
The development of rice genotypes with micronutrient-dense grains and disease resistance
is one of the major priorities in rice improvement programs. We conducted Genome-wide …

Exploring molecular backgrounds of quality traits in rice by predictive models based on high-coverage metabolomics

H Redestig, M Kusano, K Ebana, M Kobayashi… - BMC systems …, 2011 - Springer
Background Increasing awareness of limitations to natural resources has set high
expectations for plant science to deliver efficient crops with increased yields, improved …

Variability assessment of aromatic rice germplasm by pheno-genomic traits and population structure analysis

MZ Islam, M Khalequzzaman, MK Bashar, NA Ivy… - Scientific reports, 2018 - nature.com
While the pleasant scent of aromatic rice is making it more popular, with demand for
aromatic rice expected to rise in future, varieties of this have low yield potential. Genetic …

[PDF][PDF] Rice Galaxy: an open resource for plant science

V Juanillas, A Dereeper, N Beaume, G Droc… - …, 2019 - academic.oup.com
Background Rice molecular genetics, breeding, genetic diversity, and allied research (such
as rice-pathogen interaction) have adopted sequencing technologies and high-density …

Genome-wide association study of grain yield and related traits using a collection of advanced indica rice breeding lines for irrigated ecosystems

S Liang, L Wu, G Ren, X Zhao, M Zhou, D McNeil… - Field Crops …, 2016 - Elsevier
Genome-wide association study (GWAS) is an effective approach for the identification of
marker-trait associations (MTA) using more diverse germplasm not constrained by specific …

Validation of Yield Component Traits Identified by Genome‐Wide Association Mapping in a tropical japonica × tropical japonica Rice Biparental Mapping Population

GC Eizenga, MH Jia, AK Jackson, DL Boykin… - The plant …, 2019 - Wiley Online Library
The Rice Diversity Panel 1 (RDP1) was developed for genome‐wide association (GWA)
studies to explore five rice (Oryza sativa L.) subpopulations (indica, aus, aromatic, temperate …

Effective use of legacy data in a genome-wide association studies improves the credibility of quantitative trait loci detection in rice

M Suganami, S Kojima, F Wang, H Yoshida… - Plant …, 2023 - academic.oup.com
Genome-wide association studies (GWASs) are used to detect quantitative trait loci (QTL)
using genomic and phenotypic data as inputs. While genomic data are obtained with high …

Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima

P Cubry, H Pidon, KN Ta, C Tranchant-Dubreuil… - Rice, 2020 - Springer
Abstract Background African rice, Oryza glaberrima, is an invaluable resource for rice
cultivation and for the improvement of biotic and abiotic resistance properties. Since its …

Rice (Oryza sativa L.) Grain Size, Shape, and Weight-Related QTLs Identified Using GWAS with Multiple GAPIT Models and High-Density SNP Chip DNA Markers

NR Kabange, GD Dzorkpe, DS Park, Y Kwon, SB Lee… - Plants, 2023 - mdpi.com
This study investigated novel quantitative traits loci (QTLs) associated with the control of
grain shape and size as well as grain weight in rice. We employed a joint-strategy multiple …

Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection

W Xie, G Wang, M Yuan, W Yao… - Proceedings of the …, 2015 - National Acad Sciences
Intensive rice breeding over the past 50 y has dramatically increased productivity especially
in the indica subspecies, but our knowledge of the genomic changes associated with such …