Background Genome-scale phylogenetic analysis based on core gene sets is routinely used
in microbiological research. However, the techniques are still not approachable for …

Motivation: Phylogenomics integrates the vast amount of phylogenetic information contained
in complete genome sequences, and is rapidly becoming the standard for reliably inferring …

Background In the past decade, transcriptome data have become an important component
of many phylogenetic studies. They are a cost-effective source of protein-coding gene …

We have developed a semi-automatic methodology to reconstruct the phylogenetic species
tree in Protozoa, integrating different phylogenetic algorithms and programs, and …

PhyloFisher is a software package written primarily in Python3 that can be used for the
creation, analysis, and visualization of phylogenomic datasets that consist of protein …

Genome-based phylogeny plays a central role in the future taxonomy and phylogenetics of
Bacteria and Archaea by replacing 16S rRNA gene phylogeny. The concatenated core gene …

Novel sequencing technologies are rapidly expanding the size of data sets that can be
applied to phylogenetic studies. Currently the most commonly used phylogenomic …

Phylogenomics data have grown exponentially over the last decades. It is currently common
for genome-wide projects to generate hundreds or even thousands of phylogenetic trees …

Most eukaryotic lineages are microbial, and many have only recently been sampled for
phylogenetic studies or remain in the “dark area” of the tree of life where there are no …

Phydbac is a web interactive resource based on phylogenomic profiling, designed to help
microbiologists to annotate bacterial proteins. Phylogenomic annotation is based on the …