Bayesian Networks Illustrate Genomic and Residual Trait Connections in Maize (Zea mays L.)

K Töpner, GJM Rosa, D Gianola… - G3: Genes, Genomes …, 2017 - academic.oup.com
Relationships among traits were investigated on the genomic and residual levels using
novel methodology. This included inference on these relationships via Bayesian networks …

[HTML][HTML] COMPILE: a GWAS computational pipeline for gene discovery in complex genomes

MJ Hill, BW Penning, MC McCann, NC Carpita - BMC Plant Biology, 2022 - Springer
Abstract Background Genome-Wide Association Studies (GWAS) are used to identify genes
and alleles that contribute to quantitative traits in large and genetically diverse populations …

Comparing genome-wide association study results from different measurements of an underlying phenotype

JL Gage, N de Leon, MK Clayton - G3: Genes, Genomes …, 2018 - academic.oup.com
Increasing popularity of high-throughput phenotyping technologies, such as image-based
phenotyping, offer novel ways for quantifying plant growth and morphology. These new …

[HTML][HTML] On the usefulness of parental lines GWAS for predicting low heritability traits in tropical maize hybrids

G Galli, FC Alves, JS Morosini, R Fritsche-Neto - PloS one, 2020 - journals.plos.org
Genome-wide association studies (GWAS) is one of the most popular methods of studying
the genetic control of traits. This methodology has been intensely performed on inbred …

Bridging Molecular Diversity and Functional Diversity: Complex Traits Dissection in Maize.

J Yu, G Pressoir, JB Holland, S Kresovich… - Crop Sci. Soc. Am …, 2005 - crops.confex.com
The key to complex trait dissection is to bridge molecular diversity with functional diversity
found in the germplasm under study. Linkage analysis and association studies are two …

[图书][B] Association analysis in soybean

EY Hwang - 2008 - search.proquest.com
Association analysis is a new approach to identify the location of gene (s)/allele (s) of
interest. There are a number of factors determining the feasibility of whole-genome …

Empirical comparisons of different statistical models to identify and validate kernel row number-associated variants from structured multi-parent mapping populations …

J Yang, CTE Yeh, RK Ramamurthy, X Qi… - G3: Genes …, 2018 - academic.oup.com
Advances in next generation sequencing technologies and statistical approaches enable
genome-wide dissection of phenotypic traits via genome-wide association studies (GWAS) …

Genetic design and statistical power of nested association mapping in maize

J Yu, JB Holland, MD McMullen, ES Buckler - Genetics, 2008 - academic.oup.com
We investigated the genetic and statistical properties of the nested association mapping
(NAM) design currently being implemented in maize (26 diverse founders and 5000 distinct …

A unified mixed-model method for association mapping that accounts for multiple levels of relatedness

J Yu, G Pressoir, WH Briggs, I Vroh Bi, M Yamasaki… - Nature …, 2006 - nature.com
As population structure can result in spurious associations, it has constrained the use of
association studies in human and plant genetics. Association mapping, however, holds …

Practical considerations regarding the use of genotype and pedigree data to model relatedness in the context of genome-wide association studies

R Cheng, CC Parker, M Abney… - G3: Genes, Genomes …, 2013 - academic.oup.com
Genome-wide association studies of complex traits often are complicated by relatedness
among individuals. Ignoring or inappropriately accounting for relatedness often results in …