[HTML][HTML] Exploring the maize of genetic variation

M Swami - Nature Reviews Genetics, 2009 - nature.com
Understanding the basis of genetic variation for desirable agronomic traits in the staple food
source Zea mays (maize) is important for crop improvement and for developing maize as a …

Large scale genotyping and association studies

E Buckler - Proc. ASA-CSSA-SSSA Int. Annu. Meet., Indianapolis …, 2006 - scisoc.confex.com
Maize harbours tremendous natural diversity, which can be used for improvement. In our
ongoing effort to characterize molecular and functional diversity in the maize genome, we …

Genetic diversity, population structure, and association mapping of biomass traits in maize with simple sequence repeat markers

JY Park, RV Ramekar, KJ Sa, JK Lee - Genes & Genomics, 2015 - Springer
Assessing genetic diversity, population structure, and linkage disequilibrium is important in
identifying potential parental lines for breeding programs. In this study, we assessed the …

Genomic Predictions of Genetic Variances and Correlations Among Traits: Empirical Validation within the Soybean Nested Association Mapping Population

A Lorenz, CA Wartha - 2023 - researchsquare.com
Parental selection is perhaps the most critical decision a breeder makes, establishing the
foundation of the entire program for years to come. Cross selection based on predicted …

Genome-wide association analyses based on broadly different specifications for prior distributions, genomic windows, and estimation methods

C Chen, JP Steibel, RJ Tempelman - Genetics, 2017 - academic.oup.com
A currently popular strategy (EMMAX) for genome-wide association (GWA) analysis infers
association for the specific marker of interest by treating its effect as fixed while treating all …

Advances in statistical methods to handle large data sets for GWAS in crop breeding

B Mathew, MJ Sillanpää, J Léon - Advances in breeding techniques …, 2019 - oulurepo.oulu.fi
One of the most important statistical methods of handling large data sets for genome-wide
association mapping (GWAS) is quantitative trait loci (QTL) analysis. Two approaches to …

Comparison of weighted and unweighted stage‐wise analysis for genome‐wide association studies and genomic selection

TM Damesa, J Hartung, M Gowda, Y Beyene… - Crop …, 2019 - Wiley Online Library
Both genome‐wide association studies (GWAS) and genomic selection (GS) are done using
phenotypic and genomic data. The phenotypic data are usually based on multi‐environment …

Preparation and Curation of Omics Data for Genome-Wide Association Studies

F Zhu, AR Fernie, F Scossa - Genome-Wide Association Studies, 2022 - Springer
With the development of large-scale molecular phenotyping platforms, genome-wide
association studies have greatly developed, being no longer limited to the analysis of …

Population structure and linkage disequilibrium in oat (Avena sativa L.): implications for genome-wide association studies

MA Newell, D Cook, NA Tinker, JL Jannink - Theoretical and Applied …, 2011 - Springer
The level of population structure and the extent of linkage disequilibrium (LD) can have
large impacts on the power, resolution, and design of genome-wide association studies …

[PDF][PDF] Genome–phenome wide association in maize and arabidopsis identifies a common molecular and evolutionary signature

Z Liang, Y Qiu, JC Schnable - Molecular plant, 2020 - cell.com
Linking natural genetic variation to trait variation can help determine the functional roles
ofdifferent genes. Variations of one or several traits are often assessed separately. High …