Deep learning in image cytometry: a review

A Gupta, PJ Harrison, H Wieslander… - Cytometry Part …, 2019 - Wiley Online Library
Artificial intelligence, deep convolutional neural networks, and deep learning are all niche
terms that are increasingly appearing in scientific presentations as well as in the general …

Deep learning for computational cytology: A survey

H Jiang, Y Zhou, Y Lin, RCK Chan, J Liu, H Chen - Medical Image Analysis, 2023 - Elsevier
Computational cytology is a critical, rapid-developing, yet challenging topic in medical
image computing concerned with analyzing digitized cytology images by computer-aided …

Deep cytometry: deep learning with real-time inference in cell sorting and flow cytometry

Y Li, A Mahjoubfar, CL Chen, KR Niazi, L Pei… - Scientific reports, 2019 - nature.com
Deep learning has achieved spectacular performance in image and speech recognition and
synthesis. It outperforms other machine learning algorithms in problems where large …

Evaluation of deep learning strategies for nucleus segmentation in fluorescence images

JC Caicedo, J Roth, A Goodman, T Becker… - Cytometry Part …, 2019 - Wiley Online Library
Identifying nuclei is often a critical first step in analyzing microscopy images of cells and
classical image processing algorithms are most commonly used for this task. Recent …

Deep learning automates the quantitative analysis of individual cells in live-cell imaging experiments

DA Van Valen, T Kudo, KM Lane… - PLoS computational …, 2016 - journals.plos.org
Live-cell imaging has opened an exciting window into the role cellular heterogeneity plays
in dynamic, living systems. A major critical challenge for this class of experiments is the …

Analysis of live cell images: Methods, tools and opportunities

TA Nketia, H Sailem, G Rohde, R Machiraju, J Rittscher - Methods, 2017 - Elsevier
Advances in optical microscopy, biosensors and cell culturing technologies have
transformed live cell imaging. Thanks to these advances live cell imaging plays an …

Deep learning shapes single-cell data analysis

Q Ma, D Xu - Nature Reviews Molecular Cell Biology, 2022 - nature.com
Deep learning has tremendous potential in single-cell data analyses, but numerous
challenges and possible new developments remain to be explored. In this commentary, we …

Deep learning in microscopy image analysis: A survey

F Xing, Y Xie, H Su, F Liu, L Yang - IEEE transactions on neural …, 2017 - ieeexplore.ieee.org
Computerized microscopy image analysis plays an important role in computer aided
diagnosis and prognosis. Machine learning techniques have powered many aspects of …

Automating cell counting in fluorescent microscopy through deep learning with c-ResUnet

R Morelli, L Clissa, R Amici, M Cerri, T Hitrec… - Scientific Reports, 2021 - nature.com
Counting cells in fluorescent microscopy is a tedious, time-consuming task that researchers
have to accomplish to assess the effects of different experimental conditions on biological …

Application of machine learning for cytometry data

Z Hu, S Bhattacharya, AJ Butte - Frontiers in immunology, 2022 - frontiersin.org
Modern cytometry technologies present opportunities to profile the immune system at a
single-cell resolution with more than 50 protein markers, and have been widely used in both …