AssignFit: a program for simultaneous assignment and structure refinement from solid-state NMR spectra

Y Tian, CD Schwieters, SJ Opella… - Journal of Magnetic …, 2012 - Elsevier
AssignFit is a computer program developed within the XPLOR-NIH package for the
assignment of dipolar coupling (DC) and chemical shift anisotropy (CSA) restraints derived …

15N chemical shift anisotropy in protein structure refinement and comparison with NH residual dipolar couplings

RS Lipsitz, N Tjandra - Journal of Magnetic Resonance, 2003 - Elsevier
Recent methods of aligning proteins which were developed in order to measure residual
dipolar couplings (RDCs) in solution can also be used for additional applications such as …

Atomic refinement with correlated solid-state NMR restraints

R Bertram, T Asbury, F Fabiola, JR Quine… - Journal of Magnetic …, 2003 - Elsevier
The orientation data provided by solid-state NMR can provide a great deal of structural
information about membrane proteins. The quality of the information provided is, however …

Top-down approach in protein RDC data analysis: de novo estimation of the alignment tensor

K Chen, N Tjandra - Journal of biomolecular NMR, 2007 - Springer
In solution NMR spectroscopy the residual dipolar coupling (RDC) is invaluable in improving
both the precision and accuracy of NMR structures during their structural refinement. The …

Membrane Protein Structure Determination in Membrana

Y Ding, Y Yao, FM Marassi - Accounts of chemical research, 2013 - ACS Publications
The two principal components of biological membranes, the lipid bilayer and the proteins
integrated within it, have coevolved for specific functions that mediate the interactions of …

A refinement protocol to determine structure, topology, and depth of insertion of membrane proteins using hybrid solution and solid-state NMR restraints

L Shi, NJ Traaseth, R Verardi, A Cembran… - Journal of biomolecular …, 2009 - Springer
To fully describe the fold space and ultimately the biological function of membrane proteins,
it is necessary to determine the specific interactions of the protein with the membrane. This …

Protein structure determination using molecular fragment replacement and NMR dipolar couplings

F Delaglio, G Kontaxis, A Bax - Journal of the American Chemical …, 2000 - ACS Publications
Determination of the three-dimensional (3D) structure of a protein in solution from NMR data
has relied primarily on the measurement of a large number of interproton distances (NOEs) …

Structure determination in “shiftless” solid state NMR of oriented protein samples

Y Yin, AA Nevzorov - Journal of Magnetic Resonance, 2011 - Elsevier
An efficient formalism for calculating protein structures from oriented-sample NMR data in
the torsion-angle space is presented. Angular anisotropies of the NMR observables are …

Complete Cross-Validation and R-Factor Calculation of a Solid-State NMR Derived Structure

S Kim, JR Quine, TA Cross - Journal of the American Chemical …, 2001 - ACS Publications
Cross-validation of a solid-state NMR-derived membrane polypeptide structure is
demonstrated. An initial structure has been achieved directly from solid-state NMR derived …

Stereospecific assignments of protein NMR resonances based on the tertiary structure and 2D/3D NOE data

P Pristovšek, L Franzoni - Journal of computational chemistry, 2006 - Wiley Online Library
In many cases of protein structure determination by NMR a high‐quality structure is required.
An important contribution to structural precision is stereospecific assignment of magnetically …