Changes at the floor of the peptide‐binding groove induce a strong preference for Proline at position 3 of the bound peptide: Molecular dynamics simulations of HLA …

H Toh, CJ Savoie, N Kamikawaji, S Muta… - Biopolymers …, 2000 - Wiley Online Library
We report on molecular dynamics simulations of major histocompatibility complex (MHC)–
peptide complexes. Class I MHC molecules play an important role in cellular immunity by …

Automatic Sequence Design of Major Histocompatibility Complex Class I Binding Peptides Impairing CD8+ T Cell Recognition* 210

K Ogata, A Jaramillo, W Cohen, JP Briand… - Journal of Biological …, 2003 - ASBMB
An automatic protein design procedure was used to compute amino acid sequences of
peptides likely to bind the HLA-A2 major histocompatibility complex (MHC) class I allele. The …

Possible conformation of major histocompatibility antigens: implication of amino acid sequence data

VP Zav'yalov - Immunology Letters, 1981 - Elsevier
Possible conformation of major histocompatibility antigens was proposed on the basis of
homology between domains of major histocompatibility antigen polypeptide chains and …

The Conformational Flexibility and β2-Microglobulin Interaction Dynamics of the H-2Kb Heavy Chain

BH Barber, MH Smith, H Allen, DB Williams - MHC+ X: complex formation …, 1988 - Springer
The expressed gene products of the class I major histocompatibility complex (MHC) are now
recognized as key elements in the mechanism used by cytotoxic T-lymphocytes (CTLs) to …

A recombinant single‐chain human class II MHC molecule (HLA‐DR1) as a covalently linked heterotrimer of α chain, β chain, and antigenic peptide, with …

X Zhu, S Bavari, R Ulrich… - European journal of …, 1997 - Wiley Online Library
Major histocompatibility complex (MHC) class II molecules bind to numerous peptides and
display these on the cell surface for T cell recognition. In a given immune response …

Peptide-binding motif prediction by using phage display library for SasaUBA* 0301, a resistance haplotype of MHC class I molecule from Atlantic Salmon (Salmo salar …

H Zhao, T Hermsen, RJM Stet, K Skjødt… - Molecular …, 2008 - Elsevier
The structure of the peptide-binding specificity of major histocompatibility complex (MHC)
class I has been analyzed extensively in human and mouse. For fish, there are no …

Computational determination of side chain specificity for pockets in class I MHC molecules

G Vasmatzis, C Zhang, JL Cornette, C DeLisi - Molecular immunology, 1996 - Elsevier
We show that a rapidly executable computational procedure provides the basis for a
predictive understanding of antigenic peptide side chain specificity, for binding to class I …

Solution binding of an antigenic peptide to a major histocompatibility complex class I molecule and the role of beta 2-microglobulin.

LF Boyd, S Kozlowski… - Proceedings of the …, 1992 - National Acad Sciences
The major histocompatibility complex-encoded class I molecule, a noncovalent dimer of a
polymorphic 45-kDa heavy chain and a nonpolymorphic 12-kDa beta 2-microglobulin (beta …

Prediction of major histocompatibility complex binding regions of protein antigens by sequence pattern analysis.

A Sette, S Buus, E Appella, JA Smith… - Proceedings of the …, 1989 - National Acad Sciences
We have previously experimentally analyzed the structural requirements for interaction
between peptide antigens and mouse major histocompatibility complex (MHC) molecules of …

Conformational changes in mouse MHC class II proteins at acidic pH

JM Lee, CM Kay, TH Watts - International immunology, 1992 - academic.oup.com
MHC class II molecules bind peptide antigens and present them to T cells. Recent evidence
suggests that peptide-MHC class II interaction is regulated by pH. Both peptide binding to …