Affinity2Vec: drug-target binding affinity prediction through representation learning, graph mining, and machine learning

MA Thafar, M Alshahrani, S Albaradei, T Gojobori… - Scientific reports, 2022 - nature.com
Drug-target interaction (DTI) prediction plays a crucial role in drug repositioning and virtual
drug screening. Most DTI prediction methods cast the problem as a binary classification task …

DeepDTA: deep drug–target binding affinity prediction

H Öztürk, A Özgür, E Ozkirimli - Bioinformatics, 2018 - academic.oup.com
Motivation The identification of novel drug–target (DT) interactions is a substantial part of the
drug discovery process. Most of the computational methods that have been proposed to …

MFR-DTA: a multi-functional and robust model for predicting drug–target binding affinity and region

Y Hua, X Song, Z Feng, X Wu - Bioinformatics, 2023 - academic.oup.com
Motivation Recently, deep learning has become the mainstream methodology for drug–
target binding affinity prediction. However, two deficiencies of the existing methods restrict …

DTi2Vec: Drug–target interaction prediction using network embedding and ensemble learning

MA Thafar, RS Olayan, S Albaradei, VB Bajic… - Journal of …, 2021 - Springer
Drug–target interaction (DTI) prediction is a crucial step in drug discovery and repositioning
as it reduces experimental validation costs if done right. Thus, developing in-silico methods …

Deep-learning-based drug–target interaction prediction

M Wen, Z Zhang, S Niu, H Sha, R Yang… - Journal of proteome …, 2017 - ACS Publications
Identifying interactions between known drugs and targets is a major challenge in drug
repositioning. In silico prediction of drug–target interaction (DTI) can speed up the expensive …

Hierarchical graph representation learning for the prediction of drug-target binding affinity

Z Chu, F Huang, H Fu, Y Quan, X Zhou, S Liu… - Information …, 2022 - Elsevier
Computationally predicting drug-target binding affinity (DTA) has attracted increasing
attention due to its benefit for accelerating drug discovery. Currently, numerous deep …

Predicting drug–target binding affinity through molecule representation block based on multi-head attention and skip connection

L Zhang, CC Wang, X Chen - Briefings in Bioinformatics, 2022 - academic.oup.com
Exiting computational models for drug–target binding affinity prediction have much room for
improvement in prediction accuracy, robustness and generalization ability. Most deep …

GPCNDTA: prediction of drug-target binding affinity through cross-attention networks augmented with graph features and pharmacophores

L Zhang, CC Wang, Y Zhang, X Chen - Computers in Biology and Medicine, 2023 - Elsevier
Drug-target affinity prediction is a challenging task in drug discovery. The latest
computational models have limitations in mining edge information in molecule graphs …

FusionDTA: attention-based feature polymerizer and knowledge distillation for drug-target binding affinity prediction

W Yuan, G Chen, CYC Chen - Briefings in Bioinformatics, 2022 - academic.oup.com
The prediction of drug-target affinity (DTA) plays an increasingly important role in drug
discovery. Nowadays, lots of prediction methods focus on feature encoding of drugs and …

Fusion-based deep learning architecture for detecting drug-target binding affinity using target and drug sequence and structure

K Wang, M Li - IEEE Journal of Biomedical and Health …, 2023 - ieeexplore.ieee.org
Accurately predicting drug-target binding affinity plays a vital role in accelerating drug
discovery. Many computational approaches have been proposed due to costly and time …