[HTML][HTML] Deepbindgcn: Integrating molecular vector representation with graph convolutional neural networks for protein–ligand interaction prediction

H Zhang, KM Saravanan, JZH Zhang - Molecules, 2023 - mdpi.com
The core of large-scale drug virtual screening is to select the binders accurately and
efficiently with high affinity from large libraries of small molecules in which non-binders are …

[HTML][HTML] Ammvf-dti: A novel model predicting drug–target interactions based on attention mechanism and multi-view fusion

L Wang, Y Zhou, Q Chen - International Journal of Molecular Sciences, 2023 - mdpi.com
Accurate identification of potential drug–target interactions (DTIs) is a crucial task in drug
development and repositioning. Despite the remarkable progress achieved in recent years …

Tankbind: Trigonometry-aware neural networks for drug-protein binding structure prediction

W Lu, Q Wu, J Zhang, J Rao, C Li… - Advances in neural …, 2022 - proceedings.neurips.cc
Illuminating interactions between proteins and small drug molecules is a long-standing
challenge in the field of drug discovery. Despite the importance of understanding these …

Predicting drug-target interactions using restricted Boltzmann machines

Y Wang, J Zeng - Bioinformatics, 2013 - academic.oup.com
Motivation: In silico prediction of drug-target interactions plays an important role toward
identifying and developing new uses of existing or abandoned drugs. Network-based …

[HTML][HTML] Link prediction in drug-target interactions network using similarity indices

Y Lu, Y Guo, A Korhonen - BMC bioinformatics, 2017 - Springer
Background In silico drug-target interaction (DTI) prediction plays an integral role in drug
repositioning: the discovery of new uses for existing drugs. One popular method of drug …

NerLTR-DTA: drug–target binding affinity prediction based on neighbor relationship and learning to rank

X Ru, X Ye, T Sakurai, Q Zou - Bioinformatics, 2022 - academic.oup.com
Motivation Drug–target interaction prediction plays an important role in new drug discovery
and drug repurposing. Binding affinity indicates the strength of drug–target interactions …

A heterogeneous network embedding framework for predicting similarity-based drug-target interactions

Q An, L Yu - Briefings in bioinformatics, 2021 - academic.oup.com
Accurate prediction of drug-target interactions (DTIs) through biological data can reduce the
time and economic cost of drug development. The prediction method of DTIs based on a …

Three-dimensional convolutional neural networks and a cross-docked data set for structure-based drug design

PG Francoeur, T Masuda, J Sunseri, A Jia… - Journal of chemical …, 2020 - ACS Publications
One of the main challenges in drug discovery is predicting protein–ligand binding affinity.
Recently, machine learning approaches have made substantial progress on this task …

Deep learning in drug design: protein-ligand binding affinity prediction

MA Rezaei, Y Li, D Wu, X Li, C Li - IEEE/ACM transactions on …, 2020 - ieeexplore.ieee.org
Computational drug design relies on the calculation of binding strength between two
biological counterparts especially a chemical compound, ie, a ligand, and a protein …

[HTML][HTML] AttentionMGT-DTA: A multi-modal drug-target affinity prediction using graph transformer and attention mechanism

H Wu, J Liu, T Jiang, Q Zou, S Qi, Z Cui, P Tiwari… - Neural Networks, 2024 - Elsevier
The accurate prediction of drug-target affinity (DTA) is a crucial step in drug discovery and
design. Traditional experiments are very expensive and time-consuming. Recently, deep …