[HTML][HTML] Deepbindgcn: Integrating molecular vector representation with graph convolutional neural networks for protein–ligand interaction prediction
H Zhang, KM Saravanan, JZH Zhang - Molecules, 2023 - mdpi.com
The core of large-scale drug virtual screening is to select the binders accurately and
efficiently with high affinity from large libraries of small molecules in which non-binders are …
efficiently with high affinity from large libraries of small molecules in which non-binders are …
[HTML][HTML] Ammvf-dti: A novel model predicting drug–target interactions based on attention mechanism and multi-view fusion
L Wang, Y Zhou, Q Chen - International Journal of Molecular Sciences, 2023 - mdpi.com
Accurate identification of potential drug–target interactions (DTIs) is a crucial task in drug
development and repositioning. Despite the remarkable progress achieved in recent years …
development and repositioning. Despite the remarkable progress achieved in recent years …
Tankbind: Trigonometry-aware neural networks for drug-protein binding structure prediction
Illuminating interactions between proteins and small drug molecules is a long-standing
challenge in the field of drug discovery. Despite the importance of understanding these …
challenge in the field of drug discovery. Despite the importance of understanding these …
Predicting drug-target interactions using restricted Boltzmann machines
Y Wang, J Zeng - Bioinformatics, 2013 - academic.oup.com
Motivation: In silico prediction of drug-target interactions plays an important role toward
identifying and developing new uses of existing or abandoned drugs. Network-based …
identifying and developing new uses of existing or abandoned drugs. Network-based …
[HTML][HTML] Link prediction in drug-target interactions network using similarity indices
Y Lu, Y Guo, A Korhonen - BMC bioinformatics, 2017 - Springer
Background In silico drug-target interaction (DTI) prediction plays an integral role in drug
repositioning: the discovery of new uses for existing drugs. One popular method of drug …
repositioning: the discovery of new uses for existing drugs. One popular method of drug …
NerLTR-DTA: drug–target binding affinity prediction based on neighbor relationship and learning to rank
Motivation Drug–target interaction prediction plays an important role in new drug discovery
and drug repurposing. Binding affinity indicates the strength of drug–target interactions …
and drug repurposing. Binding affinity indicates the strength of drug–target interactions …
A heterogeneous network embedding framework for predicting similarity-based drug-target interactions
Q An, L Yu - Briefings in bioinformatics, 2021 - academic.oup.com
Accurate prediction of drug-target interactions (DTIs) through biological data can reduce the
time and economic cost of drug development. The prediction method of DTIs based on a …
time and economic cost of drug development. The prediction method of DTIs based on a …
Three-dimensional convolutional neural networks and a cross-docked data set for structure-based drug design
PG Francoeur, T Masuda, J Sunseri, A Jia… - Journal of chemical …, 2020 - ACS Publications
One of the main challenges in drug discovery is predicting protein–ligand binding affinity.
Recently, machine learning approaches have made substantial progress on this task …
Recently, machine learning approaches have made substantial progress on this task …
Deep learning in drug design: protein-ligand binding affinity prediction
Computational drug design relies on the calculation of binding strength between two
biological counterparts especially a chemical compound, ie, a ligand, and a protein …
biological counterparts especially a chemical compound, ie, a ligand, and a protein …
[HTML][HTML] AttentionMGT-DTA: A multi-modal drug-target affinity prediction using graph transformer and attention mechanism
The accurate prediction of drug-target affinity (DTA) is a crucial step in drug discovery and
design. Traditional experiments are very expensive and time-consuming. Recently, deep …
design. Traditional experiments are very expensive and time-consuming. Recently, deep …