Graph convolutional neural networks for predicting drug-target interactions

W Torng, RB Altman - Journal of chemical information and …, 2019 - ACS Publications
Accurate determination of target-ligand interactions is crucial in the drug discovery process.
In this paper, we propose a graph-convolutional (Graph-CNN) framework for predicting …

Modality-DTA: multimodality fusion strategy for drug–target affinity prediction

X Yang, Z Niu, Y Liu, B Song, W Lu… - … /ACM Transactions on …, 2022 - ieeexplore.ieee.org
Prediction of the drug–target affinity (DTA) plays an important role in drug discovery. Existing
deep learning methods for DTA prediction typically leverage a single modality, namely …

SS-GNN: a simple-structured graph neural network for affinity prediction

S Zhang, Y Jin, T Liu, Q Wang, Z Zhang, S Zhao… - ACS …, 2023 - ACS Publications
Efficient and effective drug-target binding affinity (DTBA) prediction is a challenging task due
to the limited computational resources in practical applications and is a crucial basis for drug …

NHGNN-DTA: a node-adaptive hybrid graph neural network for interpretable drug–target binding affinity prediction

H He, G Chen, CYC Chen - Bioinformatics, 2023 - academic.oup.com
Motivation Large-scale prediction of drug–target affinity (DTA) plays an important role in
drug discovery. In recent years, machine learning algorithms have made great progress in …

How to approach machine learning-based prediction of drug/compound–target interactions

H Atas Guvenilir, T Doğan - Journal of Cheminformatics, 2023 - Springer
The identification of drug/compound–target interactions (DTIs) constitutes the basis of drug
discovery, for which computational predictive approaches have been developed. As a …

MGPLI: exploring multigranular representations for protein–ligand interaction prediction

J Wang, J Hu, H Sun, MD Xu, Y Yu, Y Liu… - …, 2022 - academic.oup.com
Motivation The capability to predict the potential drug binding affinity against a protein target
has always been a fundamental challenge in silico drug discovery. The traditional …

Prediction of drug-target interactions and drug repositioning via network-based inference

F Cheng, C Liu, J Jiang, W Lu, W Li, G Liu… - PLoS computational …, 2012 - journals.plos.org
Drug-target interaction (DTI) is the basis of drug discovery and design. It is time consuming
and costly to determine DTI experimentally. Hence, it is necessary to develop computational …

Graph convolutional autoencoder and generative adversarial network-based method for predicting drug-target interactions

C Sun, P Xuan, T Zhang, Y Ye - IEEE/ACM transactions on …, 2020 - ieeexplore.ieee.org
The computational prediction of novel drug-target interactions (DTIs) may effectively speed
up the process of drug repositioning and reduce its costs. Most previous methods integrated …

GraphscoreDTA: optimized graph neural network for protein–ligand binding affinity prediction

K Wang, R Zhou, J Tang, M Li - Bioinformatics, 2023 - academic.oup.com
Motivation Computational approaches for identifying the protein–ligand binding affinity can
greatly facilitate drug discovery and development. At present, many deep learning-based …

DLSSAffinity: protein–ligand binding affinity prediction via a deep learning model

H Wang, H Liu, S Ning, C Zeng, Y Zhao - Physical Chemistry Chemical …, 2022 - pubs.rsc.org
Evaluating the protein–ligand binding affinity is a substantial part of the computer-aided drug
discovery process. Most of the proposed computational methods predict protein–ligand …