Genomic regions involved in yield potential detected by genome-wide association analysis in Japanese high-yielding rice cultivars

J Yonemaru, R Mizobuchi, H Kato, T Yamamoto… - BMC genomics, 2014 - Springer
Background High-yielding cultivars of rice (Oryza sativa L.) have been developed in Japan
from crosses between overseas indica and domestic japonica cultivars. Recently, next …

Discovery of Genome-Wide DNA Polymorphisms in a Landrace Cultivar of Japonica Rice by Whole-Genome Sequencing

Y Arai-Kichise, Y Shiwa, H Nagasaki… - Plant and cell …, 2011 - academic.oup.com
Molecular breeding approaches are of growing importance to crop improvement. However,
closely related cultivars generally used for crossing material lack sufficient known DNA …

Identify QTLs and candidate genes underlying source-, sink-, and grain yield-related traits in rice by integrated analysis of bi-parental and natural populations

Y Wang, J Wang, L Zhai, C Liang, K Chen, J Xu - PloS one, 2020 - journals.plos.org
The source-sink relationship determines the ultimate grain yield of rice. In this study, we
used a set of reciprocal introgression lines (ILs) derived from Xuishui09× IR2061 to map …

QTL analysis of novel genomic regions associated with yield and yield related traits in new plant type based recombinant inbred lines of rice (Oryza sativaL.)

B Marathi, S Guleria, T Mohapatra, R Parsad… - BMC plant biology, 2012 - Springer
Background Rice is staple food for more than half of the world's population including two
billion Asians, who obtain 60-70% of their energy intake from rice and its derivatives. To …

Genome-wide association studies of yield-related traits in high-latitude japonica rice

G Zhang, R Wang, J Ma, H Gao, L Deng, N Wang… - BMC Genomic …, 2021 - Springer
Abstract Background Heilongjiang Province is a high-quality japonica rice cultivation area in
China. One in ten bowls of Chinese rice is produced here. Increasing yield is one of the …

Genome-wide association study of important agronomic traits within a core collection of rice (Oryza sativa L.)

P Zhang, K Zhong, Z Zhong, H Tong - BMC plant biology, 2019 - Springer
Abstract Background Cultivated rice (Oryza sativa L.) is one of the staple food for over half of
the world's population. Thus, improvement of cultivated rice is important for the development …

Genome-wide single nucleotide polymorphisms and insertion–deletions of Oryza sativa L. subsp. japonica cultivars grown near the northern limit of rice cultivation

S Takano, S Matsuda, N Kinoshita, N Shimoda… - Molecular …, 2014 - Springer
Single nucleotide polymorphisms (SNPs) and insertions–deletions (InDels) are valuable
molecular markers for molecular breeding among genetically closely related cultivars. Rice …

Genetic determinants for agronomic and yield-related traits localized on a GBS-SNP linkage map from a japonica x indica cross in rice

TB De Leon, R Pruthi, B Jampala, AH Borjas… - Plant Gene, 2020 - Elsevier
Rice is an important cereal for human consumption. Identification of QTLs for important
agronomic traits with high resolution is essential to the identification of genes and marker …

Genome-wide searching of single-nucleotide polymorphisms among eight distantly and closely related rice cultivars (Oryza sativa L.) and a wild accession (Oryza …

L Monna, R Ohta, H Masuda, A Koike, Y Minobe - DNA research, 2006 - academic.oup.com
We searched the genomes of eight rice cultivars (Oryza sativa L. ssp. japonica and ssp.
indica) and a wild rice accession (Oryza rufipogon Griffith) for nucleotide polymorphisms …

Genome-wide association studies of ionomic and agronomic traits in USDA mini core collection of rice and comparative analyses of different mapping methods

S Liu, H Zhong, X Meng, T Sun, Y Li, SRM Pinson… - BMC Plant …, 2020 - Springer
Background Rice is an important human staple food vulnerable to heavy metal
contamination leading to serious concerns. High yield with low heavy metal contamination is …