The Earth's bounty: assessing and accessing soil microbial diversity

MR Rondon, RM Goodman, J Handelsman - Trends in biotechnology, 1999 - cell.com
The study of microbial diversity represents a major opportunity for advances in biology and
biotechnology. Recent progress in molecular microbial ecology shows that the extent of …

Invited review: microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances

J Xu - Molecular ecology, 2006 - Wiley Online Library
Microbial ecology examines the diversity and activity of micro‐organisms in Earth's
biosphere. In the last 20 years, the application of genomics tools have revolutionized …

Spatial scaling of microbial biodiversity

J Green, BJM Bohannan - Trends in ecology & evolution, 2006 - cell.com
A central goal in ecology is to understand the spatial scaling of biodiversity. Patterns in the
spatial distribution of organisms provide important clues about the underlying mechanisms …

What is the upper size limit for cosmopolitan distribution in free‐living microorganisms?

DM Wilkinson - Journal of Biogeography, 2001 - Wiley Online Library
A comparison of testate amoebae assemblages from the Arctic and Antarctic (areas of
similar habitat a maximum distance apart) is used to try and answer the question 'What is the …

Guest editorial: Phylogenetic biogeography deconstructed

MC Ebach, CJ Humphries, DM Williams - Journal of Biogeography, 2003 - JSTOR
Biogeography is a research programme with one aim, namely to'discover why organisms
are distributed the way they are today'(Platnick & Nelson, 1978: 1) by uncovering …

Biogeographical patterns of soil molecular microbial biomass as influenced by soil characteristics and management

S Dequiedt, NPA Saby, M Lelievre… - Global Ecology and …, 2011 - Wiley Online Library
Aim The spatial organization of soil microbial communities on large scales and the
identification of environmental factors structuring their distribution have been little …

Microbes on mountainsides: contrasting elevational patterns of bacterial and plant diversity

JA Bryant, C Lamanna, H Morlon… - Proceedings of the …, 2008 - National Acad Sciences
The study of elevational diversity gradients dates back to the foundation of biogeography.
Although elevational patterns of plant and animal diversity have been studied for centuries …

The origin of niches and species in the bacterial world

F Baquero, TM Coque, JC Galán… - Frontiers in …, 2021 - frontiersin.org
Niches are spaces for the biological units of selection, from cells to complex communities. In
a broad sense,“species” are biological units of individuation. Niches do not exist without …

'Everything is everywhere: but the environment selects': ubiquitous distribution and ecological determinism in microbial biogeography

MA O'Malley - Studies in History and Philosophy of Science Part C …, 2008 - Elsevier
Recent discoveries of geographical patterns in microbial distribution are undermining
microbiology's exclusively ecological explanations of biogeography and their fundamental …

Soil bacterial communities exhibit strong biogeographic patterns at fine taxonomic resolution

SK Bay, MA McGeoch, O Gillor, N Wieler, DJ Palmer… - Msystems, 2020 - Am Soc Microbiol
Bacteria have been inferred to exhibit relatively weak biogeographic patterns. To what
extent such findings reflect true biological phenomena or methodological artifacts remains …