Array comparative genomic hybridization copy number profiling: a new tool for translational research in solid malignancies
The molecular genetic investigation of cancer is rapidly evolving because of ever-improving
technology. Insights into cancer disease mechanisms are being elucidated using new …
technology. Insights into cancer disease mechanisms are being elucidated using new …
A statistical change point model approach for the detection of DNA copy number variations in array CGH data
Array comparative genomic hybridization (aCGH) provides a high-resolution and high-
throughput technique for screening of copy number variations (CNVs) within the entire …
throughput technique for screening of copy number variations (CNVs) within the entire …
Hidden Markov models approach to the analysis of array CGH data
J Fridlyand, AM Snijders, D Pinkel, DG Albertson… - Journal of multivariate …, 2004 - Elsevier
The development of solid tumors is associated with acquisition of complex genetic
alterations, indicating that failures in the mechanisms that maintain the integrity of the …
alterations, indicating that failures in the mechanisms that maintain the integrity of the …
Modeling recurrent DNA copy number alterations in array CGH data
Motivation: Recurrent DNA copy number alterations (CNA) measured with array comparative
genomic hybridization (aCGH) reveal important molecular features of human genetics and …
genomic hybridization (aCGH) reveal important molecular features of human genetics and …
Allele-specific amplification in cancer revealed by SNP array analysis
T LaFramboise, BA Weir, X Zhao… - PLoS Computational …, 2005 - journals.plos.org
Amplification, deletion, and loss of heterozygosity of genomic DNA are hallmarks of cancer.
In recent years a variety of studies have emerged measuring total chromosomal copy …
In recent years a variety of studies have emerged measuring total chromosomal copy …
Recent advances in array comparative genomic hybridization technologies and their applications in human genetics
Array comparative genomic hybridization (array CGH) is a method used to detect segmental
DNA copy number alterations. Recently, advances in this technology have enabled high …
DNA copy number alterations. Recently, advances in this technology have enabled high …
Defining ploidy-specific thresholds in array comparative genomic hybridization to improve the sensitivity of detection of single copy alterations in cell lines
G Ng, J Huang, I Roberts, N Coleman - The Journal of Molecular …, 2006 - Elsevier
Array comparative genomic hybridization (CGH) is being widely used to screen for recurrent
genomic copy number alterations in neoplasms, with imbalances typically detected through …
genomic copy number alterations in neoplasms, with imbalances typically detected through …
CGHweb: a tool for comparing DNA copy number segmentations from multiple algorithms
W Lai, V Choudhary, PJ Park - Bioinformatics, 2008 - academic.oup.com
Accurate estimation of DNA copy numbers from array comparative genomic hybridization
(CGH) data is important for characterizing the cancer genome. An important part of this …
(CGH) data is important for characterizing the cancer genome. An important part of this …
Detection of gene copy number changes in CGH microarrays using a spatially correlated mixture model
P Broët, S Richardson - Bioinformatics, 2006 - academic.oup.com
Motivation: Comparative genomic hybridization array experiments that investigate gene
copy number changes present new challenges for statistical analysis and call for methods …
copy number changes present new challenges for statistical analysis and call for methods …
Determining frequent patterns of copy number alterations in cancer
F Rapaport, C Leslie - PLoS One, 2010 - journals.plos.org
Cancer progression is often driven by an accumulation of genetic changes but also
accompanied by increasing genomic instability. These processes lead to a complicated …
accompanied by increasing genomic instability. These processes lead to a complicated …