[HTML][HTML] CGHnormaliter: an iterative strategy to enhance normalization of array CGH data with imbalanced aberrations
BPP van Houte, TW Binsl, H Hettling, W Pirovano… - BMC genomics, 2009 - Springer
Background Array comparative genomic hybridization (aCGH) is a popular technique for
detection of genomic copy number imbalances. These play a critical role in the onset of …
detection of genomic copy number imbalances. These play a critical role in the onset of …
Allele-specific copy number profiling by next-generation DNA sequencing
The progression and clonal development of tumors often involve amplifications and
deletions of genomic DNA. Estimation of allele-specific copy number, which quantifies the …
deletions of genomic DNA. Estimation of allele-specific copy number, which quantifies the …
Current status and future prospects of array-based comparative genomic hybridisation
AM Snijders, D Pinkel… - Briefings in Functional …, 2003 - academic.oup.com
The majority of human cancers as well as many developmental abnormalities harbour
chromosomal imbalances, many of which result in the gain and/or loss of genomic material …
chromosomal imbalances, many of which result in the gain and/or loss of genomic material …
A probe-density-based analysis method for array CGH data: simulation, normalization and centralization
Motivation: Genomic instability is one of the fundamental factors in tumorigenesis and tumor
progression. Many studies have shown that copy-number abnormalities at the DNA level are …
progression. Many studies have shown that copy-number abnormalities at the DNA level are …
[HTML][HTML] KC-SMARTR: An R package for detection of statistically significant aberrations in multi-experiment aCGH data
JJ de Ronde, C Klijn, A Velds, H Holstege… - BMC research …, 2010 - Springer
Background Most approaches used to find recurrent or differential DNA Copy Number
Alterations (CNA) in array Comparative Genomic Hybridization (aCGH) data from groups of …
Alterations (CNA) in array Comparative Genomic Hybridization (aCGH) data from groups of …
A multilevel model to address batch effects in copy number estimation using SNP arrays
RB Scharpf, I Ruczinski, B Carvalho, B Doan… - …, 2011 - academic.oup.com
Submicroscopic changes in chromosomal DNA copy number dosage are common and have
been implicated in many heritable diseases and cancers. Recent high-throughput …
been implicated in many heritable diseases and cancers. Recent high-throughput …
Genomic microarrays in human genetic disease and cancer
DG Albertson, D Pinkel - Human molecular genetics, 2003 - academic.oup.com
Alterations in the genome that lead to changes in DNA sequence copy number are a
characteristic of solid tumors and are found in association with developmental abnormalities …
characteristic of solid tumors and are found in association with developmental abnormalities …
Comparative genomic hybridization: microarray design and data interpretation
R Redon, NP Carter - DNA Microarrays for Biomedical Research: Methods …, 2009 - Springer
Abstract Microarray-based Comparative Genomic Hybridization (array-CGH) has been
applied for a decade to screen for submicroscopic DNA gains and losses in tumor and …
applied for a decade to screen for submicroscopic DNA gains and losses in tumor and …
Array-based comparative genomic hybridization and copy number variation in cancer research
EK Cho, J Tchinda, JL Freeman, YJ Chung… - … and genome research, 2006 - karger.com
Array-based comparative genomic hybridization (aCGH) is a molecular cytogenetic
technique used in detecting and mapping DNA copy number alterations. aCGH is able to …
technique used in detecting and mapping DNA copy number alterations. aCGH is able to …
[HTML][HTML] M-CGH: analysing microarray-based CGH experiments
Background Microarray-based comparative genomic hybridisation (array CGH) is a
technique by which variation in relative copy numbers between two genomes can be …
technique by which variation in relative copy numbers between two genomes can be …