Reprogramming histone modification patterns to coordinate gene expression in early zebrafish embryos

W Zhu, X Xu, X Wang, J Liu - BMC genomics, 2019 - Springer
Background Multicellular organisms require precise gene regulation during ontogeny, and
epigenetic modifications, such as DNA methylation and histone modification, facilitate this …

[PDF][PDF] Placeholder nucleosomes underlie germline-to-embryo DNA methylation reprogramming

PJ Murphy, SF Wu, CR James, CL Wike, BR Cairns - Cell, 2018 - cell.com
The fate and function of epigenetic marks during the germline-to-embryo transition is a key
issue in developmental biology, with relevance to stem cell programming and …

Developmental features of DNA methylation during activation of the embryonic zebrafish genome

IS Andersen, AH Reiner, H Aanes, P Aleström, P Collas - Genome biology, 2012 - Springer
Background Zygotic genome activation (ZGA) occurs at the mid-blastula transition (MBT) in
zebrafish and is a period of extensive chromatin remodeling. Genome-scale gametic …

Methylome inheritance and enhancer dememorization reset an epigenetic gate safeguarding embryonic programs

X Wu, H Zhang, B Zhang, Y Zhang, Q Wang… - Science …, 2021 - science.org
Marked epigenetic reprogramming is essential to convert terminally differentiated gametes
to totipotent embryos. It remains puzzling why postfertilization global DNA reprogramming …

Incomplete erasure of histone marks during epigenetic reprogramming in medaka early development

HS Fukushima, H Takeda, R Nakamura - Genome Research, 2023 - genome.cshlp.org
Epigenetic modifications undergo drastic erasure and reestablishment after fertilization. This
reprogramming is required for proper embryonic development and cell differentiation. In …

The developmental epigenomics toolbox: ChIP-seq and MethylCap-seq profiling of early zebrafish embryos

O Bogdanović, A Fernández-Miñán, JJ Tena… - Methods, 2013 - Elsevier
Genome-wide profiling of DNA methylation and histone modifications answered many
questions as to how the genes are regulated on a global scale and what their epigenetic …

[HTML][HTML] Reprogramming the maternal zebrafish genome after fertilization to match the paternal methylation pattern

ME Potok, DA Nix, TJ Parnell, BR Cairns - Cell, 2013 - cell.com
Early vertebrate embryos must achieve totipotency and prepare for zygotic genome
activation (ZGA). To understand this process, we determined the DNA methylation (DNAme) …

[HTML][HTML] Genome-wide epigenetic cross-talk between DNA methylation and H3K27me3 in zebrafish embryos

E de la Calle Mustienes, JL Gómez-Skarmeta… - Genomics data, 2015 - Elsevier
DNA methylation and histone modifications are epigenetic marks implicated in the complex
regulation of vertebrate embryogenesis. The cross-talk between DNA methylation and …

Variant Histone H2afv reprograms DNA methylation during early zebrafish development

B Madakashira, L Corbett, C Zhang, P Paoli… - Epigenetics, 2017 - Taylor & Francis
The DNA methylome is re-patterned during discrete phases of vertebrate development. In
zebrafish, there are 2 waves of global DNA demethylation and re-methylation: the first …

DNA methylation dynamics during epigenetic reprogramming of medaka embryo

X Wang, RK Bhandari - Epigenetics, 2019 - Taylor & Francis
Post-fertilization epigenome reprogramming erases epigenetic marks transmitted through
gametes and establishes new marks during mid-blastula stages. The mouse embryo …