[HTML][HTML] Crop epigenomics: identifying, unlocking, and harnessing cryptic variation in crop genomes

L Ji, DA Neumann, RJ Schmitz - Molecular plant, 2015 - cell.com
DNA methylation is a key chromatin modification in plant genomes that is meiotically and
mitotically heritable, and at times is associated with gene expression and morphological …

Exploring and exploiting epigenetic variation in crops

GJ King, S Amoah, S Kurup - Genome, 2010 - cdnsciencepub.com
This review addresses the mechanisms by which epigenetic variation modulates plant gene
regulation and phenotype. In particular we explore the scope for harnessing such processes …

[HTML][HTML] Plant epigenomics—deciphering the mechanisms of epigenetic inheritance and plasticity in plants

C Köhler, N Springer - Genome Biology, 2017 - Springer
It is an exciting time to study plant epigenetics. Technological advances are providing
unprecedented opportunities to monitor chromatin modifications, gene expression, and …

The causes and consequences of DNA methylome variation in plants

DK Seymour, C Becker - Current opinion in plant biology, 2017 - Elsevier
Highlights•Epigenetic variation in plants is frequently linked to genetic variation.•Single large
effect mutations perturb the epigenetic landscape in trans.•DNA methylation regulates …

Intertwined evolution of plant epigenomes and genomes

EJ Ritter, CE Niederhuth - Current Opinion in Plant Biology, 2021 - Elsevier
DNA methylation is found across eukaryotes; however, plants have evolved patterns and
pathways of DNA methylation that are distinct from animals and fungi. DNA methylation …

Diversity and dynamics of DNA methylation: Epigenomic resources and tools for crop breeding

T Kawakatsu, JR Ecker - Breeding science, 2019 - jstage.jst.go.jp
DNA methylation is an epigenetic modification that can affect gene expression and
transposable element (TE) activities. Because cytosine DNA methylation patterns are …

Putting DNA methylation in context: from genomes to gene expression in plants

CE Niederhuth, RJ Schmitz - Biochimica et Biophysica Acta (BBA)-Gene …, 2017 - Elsevier
Plant DNA methylation is its own language, interpreted by the cell to maintain silencing of
transposons, facilitate chromatin structure, and to ensure proper expression of some genes …

[HTML][HTML] Covering your bases: inheritance of DNA methylation in plant genomes

CE Niederhuth, RJ Schmitz - Molecular plant, 2014 - cell.com
Cytosine methylation is an important base modification that is inherited across mitotic and
meiotic cell divisions in plant genomes. Heritable methylation variants can contribute to …

Accessing epigenetic variation in the plant methylome

KD Kim, M El Baidouri… - Briefings in Functional …, 2014 - academic.oup.com
Cytosine DNA methylation is the addition of a methyl group to the 5′ position of a cytosine,
which plays a crucial role in plant development and gene silencing. Genome-wide profiling …

[HTML][HTML] Exploring the crop epigenome: a comparison of DNA methylation profiling techniques

DR Agius, A Kapazoglou, E Avramidou… - Frontiers in Plant …, 2023 - frontiersin.org
Epigenetic modifications play a vital role in the preservation of genome integrity and in the
regulation of gene expression. DNA methylation, one of the key mechanisms of epigenetic …