[HTML][HTML] pRRophetic: an R package for prediction of clinical chemotherapeutic response from tumor gene expression levels
We recently described a methodology that reliably predicted chemotherapeutic response in
multiple independent clinical trials. The method worked by building statistical models from …
multiple independent clinical trials. The method worked by building statistical models from …
Computational models for predicting drug responses in cancer research
F Azuaje - Briefings in bioinformatics, 2017 - academic.oup.com
The computational prediction of drug responses based on the analysis of multiple types of
genome-wide molecular data is vital for accomplishing the promise of precision medicine in …
genome-wide molecular data is vital for accomplishing the promise of precision medicine in …
A survey and systematic assessment of computational methods for drug response prediction
J Chen, L Zhang - Briefings in bioinformatics, 2021 - academic.oup.com
Drug response prediction arises from both basic and clinical research of personalized
therapy, as well as drug discovery for cancers. With gene expression profiles and other …
therapy, as well as drug discovery for cancers. With gene expression profiles and other …
oncoPredict: an R package for predicting in vivo or cancer patient drug response and biomarkers from cell line screening data
D Maeser, RF Gruener, RS Huang - Briefings in bioinformatics, 2021 - academic.oup.com
Cell line drug screening datasets can be utilized for a range of different drug discovery
applications from drug biomarker discovery to building translational models of drug …
applications from drug biomarker discovery to building translational models of drug …
Predicting in vitro drug sensitivity using Random Forests
G Riddick, H Song, S Ahn, J Walling… - …, 2011 - academic.oup.com
Motivation: Panels of cell lines such as the NCI-60 have long been used to test drug
candidates for their ability to inhibit proliferation. Predictive models of in vitro drug sensitivity …
candidates for their ability to inhibit proliferation. Predictive models of in vitro drug sensitivity …
A cross-study analysis of drug response prediction in cancer cell lines
To enable personalized cancer treatment, machine learning models have been developed
to predict drug response as a function of tumor and drug features. However, most algorithm …
to predict drug response as a function of tumor and drug features. However, most algorithm …
Drug sensitivity prediction from cell line-based pharmacogenomics data: guidelines for developing machine learning models
H Sharifi-Noghabi… - Briefings in …, 2021 - academic.oup.com
The goal of precision oncology is to tailor treatment for patients individually using the
genomic profile of their tumors. Pharmacogenomics datasets such as cancer cell lines are …
genomic profile of their tumors. Pharmacogenomics datasets such as cancer cell lines are …
[HTML][HTML] Clinical drug response can be predicted using baseline gene expression levels and in vitrodrug sensitivity in cell lines
We demonstrate a method for the prediction of chemotherapeutic response in patients using
only before-treatment baseline tumor gene expression data. First, we fitted models for whole …
only before-treatment baseline tumor gene expression data. First, we fitted models for whole …
[HTML][HTML] An ensemble based top performing approach for NCI-DREAM drug sensitivity prediction challenge
We consider the problem of predicting sensitivity of cancer cell lines to new drugs based on
supervised learning on genomic profiles. The genetic and epigenetic characterization of a …
supervised learning on genomic profiles. The genetic and epigenetic characterization of a …
TANDEM: a two-stage approach to maximize interpretability of drug response models based on multiple molecular data types
Motivation Clinical response to anti-cancer drugs varies between patients. A large portion of
this variation can be explained by differences in molecular features, such as mutation status …
this variation can be explained by differences in molecular features, such as mutation status …