[HTML][HTML] Targeted analysis of nucleotide and copy number variation by exon capture in allotetraploid wheat genome

C Saintenac, D Jiang, ED Akhunov - Genome biology, 2011 - Springer
Background The ability of grass species to adapt to various habitats is attributed to the
dynamic nature of their genomes, which have been shaped by multiple rounds of ancient …

Uncovering hidden variation in polyploid wheat

KV Krasileva, HA Vasquez-Gross… - Proceedings of the …, 2017 - National Acad Sciences
Comprehensive reverse genetic resources, which have been key to understanding gene
function in diploid model organisms, are missing in many polyploid crops. Young polyploid …

[HTML][HTML] A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes

KW Jordan, S Wang, Y Lun, LJ Gardiner… - Genome biology, 2015 - Springer
Background Bread wheat is an allopolyploid species with a large, highly repetitive genome.
To investigate the impact of selection on variants distributed among homoeologous wheat …

Combining traditional mutagenesis with new high-throughput sequencing and genome editing to reveal hidden variation in polyploid wheat

C Uauy, BBH Wulff, J Dubcovsky - Annual Review of Genetics, 2017 - annualreviews.org
Induced mutations have been used to generate novel variation for breeding purposes since
the early 1900s. However, the combination of this old technology with the new capabilities of …

Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat

ED Akhunov, S Sehgal, H Liang, S Wang… - Plant …, 2013 - academic.oup.com
Cycles of whole-genome duplication (WGD) and diploidization are hallmarks of eukaryotic
genome evolution and speciation. Polyploid wheat (Triticum aestivum) has had a massive …

[HTML][HTML] Homoeolog-specific transcriptional bias in allopolyploid wheat

AR Akhunova, RT Matniyazov, H Liang, ED Akhunov - BMC genomics, 2010 - Springer
Background Interaction between parental genomes is accompanied by global changes in
gene expression which, eventually, contributes to growth vigor and the broader phenotypic …

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for …

BJ Clavijo, L Venturini, C Schudoma… - Genome …, 2017 - genome.cshlp.org
Advances in genome sequencing and assembly technologies are generating many high-
quality genome sequences, but assemblies of large, repeat-rich polyploid genomes, such as …

Applying the latest advances in genomics and phenomics for trait discovery in polyploid wheat

P Borrill, SA Harrington, C Uauy - The Plant Journal, 2019 - Wiley Online Library
Improving traits in wheat has historically been challenging due to its large and polyploid
genome, limited genetic diversity and in‐field phenotyping constraints. However, within …

[HTML][HTML] Genomic variants affecting homoeologous gene expression dosage contribute to agronomic trait variation in allopolyploid wheat

F He, W Wang, WB Rutter, KW Jordan, J Ren… - Nature …, 2022 - nature.com
Allopolyploidy greatly expands the range of possible regulatory interactions among
functionally redundant homoeologous genes. However, connection between the emerging …

[HTML][HTML] Mutation scanning in wheat by exon capture and next-generation sequencing

R King, N Bird, R Ramirez-Gonzalez, JA Coghill… - PLoS …, 2015 - journals.plos.org
Targeted Induced Local Lesions in Genomes (TILLING) is a reverse genetics approach to
identify novel sequence variation in genomes, with the aims of investigating gene function …