Transcriptome analysis reveals differences in the mechanisms of fiber initiation and elongation between long- and short-fiber cotton (Gossypium hirsutum L.) lines

Y Qin, H Sun, P Hao, H Wang, C Wang, L Ma, H Wei… - BMC genomics, 2019 - Springer
Background Improving the yield and fiber quality of upland cotton is a goal of plant breeders.
However, increasing the yield and quality of cotton fibers is becoming more urgent. While …

Identification of candidate genes for fiber length quantitative trait loci through RNA-Seq and linkage and physical mapping in cotton

X Li, M Wu, G Liu, W Pei, H Zhai, J Yu, J Zhang, S Yu - BMC genomics, 2017 - Springer
Abstract Background Cotton (Gossypium spp.) fibers are single-celled elongated trichomes,
the molecular aspects of genetic variation in fiber length (FL) among genotypes are currently …

The genomic basis of geographic differentiation and fiber improvement in cultivated cotton

S He, G Sun, X Geng, W Gong, P Dai, Y Jia, W Shi… - Nature Genetics, 2021 - nature.com
Large-scale genomic surveys of crop germplasm are important for understanding the
genetic architecture of favorable traits. The genomic basis of geographic differentiation and …

Development of genomic resources for cotton (Gossypium hirsutum L.): BAC library construction, preliminary STC analysis, and identification of clones associated …

JP Tomkins, DG Peterson, TJ Yang, D Main… - Molecular …, 2001 - Springer
We have constructed a cotton (Gossypium hirsutum L.) BAC library using the elite Acala-type
cultivar Maxxa. The BAC library contains 129 024 clones comprising 8.3 haploid genome …

Recent advances and future perspectives in cotton research

G Huang, JQ Huang, XY Chen… - Annual review of plant …, 2021 - annualreviews.org
Cotton is not only the world's most important natural fiber crop, but it is also an ideal system
in which to study genome evolution, polyploidization, and cell elongation. With the assembly …

RNA-seq-mediated transcriptome analysis of a fiberless mutant cotton and its possible origin based on SNP markers

Q Ma, M Wu, W Pei, X Wang, H Zhai, W Wang, X Li… - PloS one, 2016 - journals.plos.org
As the longest known single-celled trichomes, cotton (Gossypium L.) fibers constitute a
classic model system to investigate cell initiation and elongation. In this study, we used a …

Genomically biased accumulation of seed storage proteins in allopolyploid cotton

G Hu, NL Houston, D Pathak, L Schmidt, JJ Thelen… - Genetics, 2011 - academic.oup.com
Allopolyploidy is an important process during plant evolution that results in the reunion of
two divergent genomes into a common nucleus. Many of the immediate as well as longer …

Insights into the Evolution of the New World Diploid Cottons (Gossypium, Subgenus Houzingenia) Based on Genome Sequencing

CE Grover, MA Arick, A Thrash… - Genome Biology and …, 2019 - academic.oup.com
We employed phylogenomic methods to study molecular evolutionary processes and
phylogeny in the geographically widely dispersed New World diploid cottons (Gossypium …

Whole genome sequencing of a MAGIC population identified genomic loci and candidate genes for major fiber quality traits in upland cotton (Gossypium hirsutum L.)

GN Thyssen, JN Jenkins, JC McCarty, L Zeng… - Theoretical and Applied …, 2019 - Springer
Key message Significant associations between candidate genes and six major cotton fiber
quality traits were identified in a MAGIC population using GWAS and whole genome …

Genome resources for three modern cotton lines guide future breeding efforts

A Sreedasyam, JT Lovell, S Mamidi, S Khanal… - Nature Plants, 2024 - nature.com
Cotton (Gossypium hirsutum L.) is the key renewable fibre crop worldwide, yet its yield and
fibre quality show high variability due to genotype-specific traits and complex interactions …