[HTML][HTML] GRAND: An Integrated Genome, Transcriptome Resources, and Gene Network Database for Gossypium

Z Zhang, M Chai, Z Yang, Z Yang, L Fan - Frontiers in Plant Science, 2022 - frontiersin.org
With the increasing amount of cotton omics data, breeding scientists are confronted with the
question of how to use massive cotton data to mine effective breeding information. Here, we …

[HTML][HTML] Custom selected reference genes outperform pre-defined reference genes in transcriptomic analysis

KCG Dos Santos, I Desgagné-Penix, H Germain - BMC genomics, 2020 - Springer
Background RNA sequencing allows the measuring of gene expression at a resolution
unmet by expression arrays or RT-qPCR. It is however necessary to normalize sequencing …

A Long‐Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery

H Ashrafi, AM Hulse‐Kemp, F Wang, SS Yang… - The plant …, 2015 - Wiley Online Library
Upland cotton (Gossypium hirsutum L.) has a narrow germplasm base, which constrains
marker development and hampers intraspecific breeding. A pressing need exists for high …

[HTML][HTML] Generation, Annotation and Analysis of First Large-Scale Expressed Sequence Tags from Developing Fiber of Gossypium barbadense L

D Yuan, L Tu, X Zhang - PLoS One, 2011 - journals.plos.org
Background Cotton fiber is the world's leading natural fiber used in the manufacture of
textiles. Gossypium is also the model plant in the study of polyploidization, evolution, cell …

Functional Analysis of the Gossypium arboreum Genome

RA Barthelson, U Qaisar, DW Galbraith - Plant molecular biology reporter, 2010 - Springer
Gossypium arboreum is an Old World relative of the more commonly cultivated commercial
species Gossypium hirsutum, a newer genetic line formed in the New World. G. arboreum …

SNP Marker Discovery in Pima Cotton (Gossypium barbadense L.) Leaf Transcriptomes

P Kottapalli, M Ulloa, KR Kottapalli… - Genomics …, 2016 - journals.sagepub.com
The objective of this study was to explore the known narrow genetic diversity and discover
single-nucleotide polymorphic (SNP) markers for marker-assisted breeding within Pima …

[HTML][HTML] Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe

S Feng, M Xu, F Liu, C Cui, B Zhou - BMC plant biology, 2019 - Springer
Abstract Background Gossypium australe F. Mueller (2 n= 2 x= 26, G 2 genome) possesses
valuable characteristics. For example, the delayed gland morphogenesis trait causes …

Global analysis of the developmental dynamics of Gossypium hirsutum based on strand‐specific transcriptome

L Ma, Y Wang, G Yan, S Wei, D Zhou… - Physiologia …, 2016 - Wiley Online Library
Cotton is an economically important crop that provides both natural fiber and by‐products
such as oil and protein. Its global gene expression could provide insight into the biological …

[HTML][HTML] Multi-strategic RNA-seq analysis reveals a high-resolution transcriptional landscape in cotton

K Wang, D Wang, X Zheng, A Qin, J Zhou… - Nature …, 2019 - nature.com
Cotton is an important natural fiber crop, however, its comprehensive and high-resolution
gene map is lacking. Here we integrate four complementary high-throughput techniques …

[HTML][HTML] Detection of single nucleotide polymorphisms in the conserved ESTs regions of Gossypium arboreum

T Shaheen, Y Zafar - Electronic Journal of Biotechnology, 2010 - SciELO Chile
Exploring genetic variation in Gossypium arboreum L. germplasm is useful as it contains
many important genes conferring resistance to different stresses. In limited earlier studies …