[HTML][HTML] Genome-wide transcriptome analysis of cotton (Gossypium hirsutum L.) identifies candidate gene signatures in response to aflatoxin producing fungus …

R Bedre, K Rajasekaran, VR Mangu… - PLoS …, 2015 - journals.plos.org
Aflatoxins are toxic and potent carcinogenic metabolites produced from the fungi Aspergillus
flavus and A. parasiticus. Aflatoxins can contaminate cottonseed under conducive …

[HTML][HTML] Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions

N Bokros, SC Popescu, GV Popescu - BMC bioinformatics, 2019 - Springer
Background Gene families are sets of structurally and evolutionarily related genes–in one or
multiple species–that typically share a conserved biological function. As such, the …

[HTML][HTML] High-density 80 K SNP array is a powerful tool for genotyping G. hirsutum accessions and genome analysis

C Cai, G Zhu, T Zhang, W Guo - BMC genomics, 2017 - Springer
Background High-throughput genotyping platforms play important roles in plant genomic
studies. Cotton (Gossypium spp.) is the world's important natural textile fiber and oil crop …

Using Genome‐Referenced Expressed Sequence Tag Assembly to Analyze the Origin and Expression Patterns of Gossypium hirsutum Transcripts

X Jin, Q Li, G Xiao, YX Zhu - Journal of integrative plant biology, 2013 - Wiley Online Library
We assembled a total of 297,239 Gossypium hirsutum (Gh, a tetraploid cotton, AADD)
expressed sequence tag (EST) sequences that were available in the National Center for …

Validation of suitable reference genes for quantitative gene expression analysis in Tripterygium wilfordii

J Zhang, C Zhu, Y Huo, B Zhang, Z Ma, J Feng… - Molecular biology …, 2019 - Springer
Validation of suitable reference genes is critical in quantitative real-time polymerase chain
reaction (qRT-PCR) analysis. Suitable and reliable reference genes for the normalization of …

[HTML][HTML] Characterization of expressed sequence tags from developing fibers of Gossypium barbadenseand evaluation of insertion-deletion variation in tetraploid …

Y Lv, L Zhao, X Xu, L Wang, C Wang, T Zhang, W Guo - BMC genomics, 2013 - Springer
Background Cotton is the leading fiber crop worldwide. Gossypium barbadense is an
important species of cotton because of its extra-long staple fibers with superior luster and …

Development of genomic resources for cotton (Gossypium hirsutum L.): BAC library construction, preliminary STC analysis, and identification of clones associated …

JP Tomkins, DG Peterson, TJ Yang, D Main… - Molecular …, 2001 - Springer
We have constructed a cotton (Gossypium hirsutum L.) BAC library using the elite Acala-type
cultivar Maxxa. The BAC library contains 129 024 clones comprising 8.3 haploid genome …

[HTML][HTML] Selection and Validation of Reference Genes for Quantitative Real-time PCR in Gentiana macrophylla

Y He, H Yan, W Hua, Y Huang, Z Wang - Frontiers in plant science, 2016 - frontiersin.org
Real time quantitative PCR (RT-qPCR or qPCR) has been extensively applied for analyzing
gene expression because of its accuracy, sensitivity, and high throughput. However, the …

[HTML][HTML] RNA-Seq Transcriptome Profiling of Upland Cotton (Gossypium hirsutum L.) Root Tissue under Water-Deficit Stress

MJ Bowman, W Park, PJ Bauer, JA Udall, JT Page… - PLoS …, 2013 - journals.plos.org
An RNA-Seq experiment was performed using field grown well-watered and naturally rain
fed cotton plants to identify differentially expressed transcripts under water-deficit stress. Our …

[HTML][HTML] Integration of eQTL analysis and GWAS highlights regulation networks in cotton under stress condition

X Han, C Gao, L Liu, Y Zhang, Y Jin, Q Yan… - International Journal of …, 2022 - mdpi.com
The genus Gossypium is one of the most economically important crops in the world. Here,
we used RNA-seq to quantify gene expression in a collection of G. arboreum seedlings and …