Full-length annotation with multistrategy RNA-seq uncovers transcriptional regulation of lncRNAs in cotton

X Zheng, Y Chen, Y Zhou, K Shi, X Hu, D Li… - Plant …, 2021 - academic.oup.com
Long noncoding RNAs (lncRNAs) are crucial factors during plant development and
environmental responses. To build an accurate atlas of lncRNAs in the diploid cotton …

[HTML][HTML] Reliable reference genes for normalization of gene expression in cucumber grown under different nitrogen nutrition

A Warzybok, M Migocka - PloS one, 2013 - journals.plos.org
In plants, nitrogen is the most important nutritional factor limiting the yield of cultivated crops.
Since nitrogen is essential for synthesis of nucleotides, amino acids and proteins, studies on …

A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium

W Guo, C Cai, C Wang, Z Han, X Song, K Wang… - Genetics, 2007 - academic.oup.com
The mapping of functional genes plays an important role in studies of genome structure,
function, and evolution, as well as allowing gene cloning and marker-assisted selection to …

Generation of transcriptome profiling and gene functional analysis in Gossypium hirsutum upon Verticillium dahliae infection

W Zhang, H Zhang, F Qi, G Jian - Biochemical and Biophysical Research …, 2016 - Elsevier
Verticillium wilt caused by the soil-borne fungus Verticillium dahliae, is a devastating
disease in cotton. To get more candidate genes related to wilt resistance, a normalized, full …

The Gossypium herbaceum L. Wagad genome as a resource for understanding cotton domestication

T Ramaraj, CE Grover, AC Mendoza, MA Arick… - G3, 2023 - academic.oup.com
Gossypium herbaceum is a species of cotton native to Africa and Asia that is one of the 2
domesticated diploids. Together with its sister-species G. arboreum, these A-genome taxa …

[HTML][HTML] Gossypium tomentosum genome and interspecific ultra-dense genetic maps reveal genomic structures, recombination landscape and flowering depression in …

C Shen, N Wang, D Zhu, P Wang, M Wang, T Wen… - Genomics, 2021 - Elsevier
The high-quality reference-grade genome for Gossupium tomentosum can greatly promote
the progress in biological research and introgression breeding for the mainly cultivated …

[HTML][HTML] Validation of Suitable Reference Genes for Quantitative Gene Expression Analysis in Panax ginseng

M Wang, S Lu - Frontiers in plant science, 2016 - frontiersin.org
Reverse transcription-qPCR (RT-qPCR) has become a popular method for gene expression
studies. Its results require data normalization by housekeeping genes. No single gene is …

[HTML][HTML] Construction of a high-density genetic map and identification of QTLs related to agronomic and physiological traits in an interspecific (Gossypium hirsutum× …

Z Si, S Jin, J Chen, S Wang, L Fang, X Zhu, T Zhang… - BMC genomics, 2022 - Springer
Background Advances in genome sequencing technology, particularly restriction-site
associated DNA sequence (RAD-seq) and whole-genome resequencing, have greatly aided …

[HTML][HTML] Reference genes identification for qRT-PCR normalization of gene expression analysis in Cucumis sativus under Meloidogyne incognita infection and …

T Ji, S Ma, M Liang, X Wang, L Gao… - Frontiers in Plant Science, 2022 - frontiersin.org
qRT-PCR is a common and key technical means to study gene expression in biological
research. However, reliability and accuracy of quantification by qRT-PCR is entirely …

[HTML][HTML] Selection and Validation of Appropriate Reference Genes for qRT-PCR Analysis in Isatis indigotica Fort.

T Li, J Wang, M Lu, T Zhang, X Qu… - Frontiers in plant science, 2017 - frontiersin.org
Due to its sensitivity and specificity, real-time quantitative PCR (qRT-PCR) is a popular
technique for investigating gene expression levels in plants. Based on the Minimum …