Genome-wide functional analysis of the cotton transcriptome by creating an integrated EST database

F Xie, G Sun, JW Stiller, B Zhang - PloS one, 2011 - journals.plos.org
A total of 28,432 unique contigs (25,371 in consensus contigs and 3,061 as singletons) were
assembled from all 268,786 cotton ESTs currently available. Several in silico approaches …

Transcriptome Profiling of Gossypium anomalum Seedlings Reveals Key Regulators and Metabolic Pathways in Response to Drought Stress

W Ji, H Yu, Y Shangguan, J Cao, X Chen, L Zhao… - Plants, 2023 - mdpi.com
Drought stress is a key limiting factor for cotton (Gossypium spp.) growth, production,
development, and production worldwide. Some wild diploid cotton species are remarkably …

Using RNA-Seq data to evaluate reference genes suitable for gene expression studies in soybean

AKY Yim, JWH Wong, YS Ku, H Qin, TF Chan, HM Lam - PloS one, 2015 - journals.plos.org
Differential gene expression profiles often provide important clues for gene functions. While
reverse transcription quantitative real-time polymerase chain reaction (RT-qPCR) is an …

Digital gene expression analysis of mature seeds of transgenic maize overexpressing Aspergillus niger phyA2 and its non-transgenic counterpart

J Rao, L Yang, C Wang, D Zhang, J Shi - GM crops & food, 2013 - Taylor & Francis
The next generation sequencing technologies have been recently used for transcriptome
analysis in many organisms because of the decreased sequencing cost and increased …

The Gossypium longicalyx Genome as a Resource for Cotton Breeding and Evolution

CE Grover, M Pan, D Yuan, MA Arick… - G3: Genes …, 2020 - academic.oup.com
Cotton is an important crop that has made significant gains in production over the last
century. Emerging pests such as the reniform nematode have threatened cotton production …

Genome-Wide Mining and Characterization of SSR Markers for Gene Mapping and Gene Diversity in Gossypium barbadense L. and Gossypium darwinii G. Watt …

A Ditta, Z Zhou, X Cai, M Shehzad, X Wang… - Agronomy, 2018 - mdpi.com
The present study aimed to characterize the simple sequence repeat markers in cotton using
the cotton expressed sequence tags. A total of 111 EST-SSR polymorphic molecular …

CottonGen: the community database for cotton genomics, genetics, and breeding research

J Yu, S Jung, CH Cheng, T Lee, P Zheng, K Buble… - Plants, 2021 - mdpi.com
Over the last eight years, the volume of whole genome, gene expression, SNP genotyping,
and phenotype data generated by the cotton research community has exponentially …

Development of New Candidate Gene and EST‐Based Molecular Markers for Gossypium Species

R Buyyarapu, RV Kantety, JZ Yu… - … Journal of Plant …, 2011 - Wiley Online Library
New source of molecular markers accelerate the efforts in improving cotton fiber traits and
aid in developing high‐density integrated genetic maps. We developed new markers based …

Deciphering the complex cotton genome for improving fiber traits and abiotic stress resilience in sustainable agriculture

A Manivannan, T Cheeran Amal - Molecular Biology Reports, 2023 - Springer
Background Understanding the complex cotton genome is of paramount importance in
devising a strategy for sustainable agriculture. Cotton is probably the most economically …

Selection and validation of reference genes for RT-qPCR analysis in Desmodium styracifolium Merr

Z Wang, F Yu, D Shi, Y Wang, F Xu, S Zeng - 3 Biotech, 2021 - Springer
Gene expression valuated by reverse transcription-quantitative PCR (RT-qPCR) are often
applied to study the gene function. To obtain accurate and reliable results, the usage of …