Genome wide search to identify reference genes candidates for gene expression analysis in Gossypium hirsutum

PK Smitha, K Vishnupriyan, AS Kar, M Anil Kumar… - BMC plant biology, 2019 - Springer
Background Cotton is one of the most important commercial crops as the source of natural
fiber, oil and fodder. To protect it from harmful pest populations number of newer transgenic …

Selection and validation of reliable reference genes in Gossypium raimondii

R Sun, Q He, B Zhang, Q Wang - Biotechnology letters, 2015 - Springer
Objective To identify reliable reference genes for gene expression analysis in Gossypium
raimondii. Results Five different software tools, geNorm, NormFinder, BestKeeper, ReFinder …

Identification and evaluation of new reference genes in Gossypium hirsutumfor accurate normalization of real-time quantitative RT-PCR data

S Artico, SM Nardeli, O Brilhante, MF Grossi-de-Sa… - BMC plant biology, 2010 - Springer
Background Normalizing through reference genes, or housekeeping genes, can make more
accurate and reliable results from reverse transcription real-time quantitative polymerase …

Generation and analysis of a large-scale expressed sequence tag database from a full-length enriched cDNA library of developing leaves of Gossypium hirsutum L

M Lin, D Lai, C Pang, S Fan, M Song, S Yu - PLoS One, 2013 - journals.plos.org
Background Cotton (Gossypium hirsutum L.) is one of the world's most economically-
important crops. However, its entire genome has not been sequenced, and limited resources …

Large‐scale resource development in Gossypium hirsutum L. by 454 sequencing of genic‐enriched libraries from six diverse genotypes

KM Rai, SK Singh, A Bhardwaj, V Kumar… - Plant Biotechnology …, 2013 - Wiley Online Library
The sequence information has been proved to be an essential genomic resource in case of
crop plants for their genetic improvement and better utilization by humans. To dissect the G …

GraP: platform for functional genomics analysis of Gossypium raimondii

L Zhang, J Guo, Q You, X Yi, Y Ling, W Xu, J Hua… - Database, 2015 - academic.oup.com
Cotton (Gossypium spp.) is one of the most important natural fiber and oil crops worldwide.
Improvement of fiber yield and quality under changing environments attract much attention …

Evaluation and selection of reliable reference genes for gene expression under abiotic stress in cotton (Gossypium hirsutum L.)

M Wang, Q Wang, B Zhang - Gene, 2013 - Elsevier
Reference genes are critical for normalization of the gene expression level of target genes.
The widely used housekeeping genes may change their expression levels at different tissue …

PlantRGS: a web server for the identification of most suitable candidate reference genes for quantitative gene expression studies in plants

RK Patel, M Jain - DNA research, 2011 - academic.oup.com
Normalization of quantitative gene expression data with a suitable reference gene is
essential for accurate and reliable results. However, the availability and choice of most …

Whole-Genome Resequencing Deciphers New Insight Into Genetic Diversity and Signatures of Resistance in Cultivated Cotton Gossypium hirsutum

A Hussain, M Farooq, RZ Naqvi, MQ Aslam… - Molecular …, 2023 - Springer
Cotton is an important crop that produces fiber and cottonseed oil for the textile and oil
industry. However, cotton leaf curl virus disease (CLCuD) stress is limiting its yield in several …

CottonFGD: an integrated functional genomics database for cotton

T Zhu, C Liang, Z Meng, G Sun, Z Meng, S Guo… - BMC plant biology, 2017 - Springer
Abstract Background Cotton (Gossypium spp.) is the most important fiber and oil crop in the
world. With the emergence of huge-omics data sets, it is essential to have an integrated …