Rosetta FlexPepDock web server—high resolution modeling of peptide–protein interactions
Peptide–protein interactions are among the most prevalent and important interactions in the
cell, but a large fraction of those interactions lack detailed structural characterization. The …
cell, but a large fraction of those interactions lack detailed structural characterization. The …
[HTML][HTML] High-resolution global peptide-protein docking using fragments-based PIPER-FlexPepDock
Peptide-protein interactions contribute a significant fraction of the protein-protein
interactome. Accurate modeling of these interactions is challenging due to the vast …
interactome. Accurate modeling of these interactions is challenging due to the vast …
MDockPeP: An ab‐initio protein–peptide docking server
Protein–peptide interactions play a crucial role in a variety of cellular processes. The protein–
peptide complex structure is a key to understand the mechanisms underlying protein …
peptide complex structure is a key to understand the mechanisms underlying protein …
Peptide docking and structure-based characterization of peptide binding: from knowledge to know-how
Highlights•Accrual of peptide–protein complex structures allowed their detailed
characterization.•This has lead to rapid progress in peptide docking, based on diverse …
characterization.•This has lead to rapid progress in peptide docking, based on diverse …
[HTML][HTML] Rosetta FlexPepDock ab-initio: Simultaneous Folding, Docking and Refinement of Peptides onto Their Receptors
Flexible peptides that fold upon binding to another protein molecule mediate a large number
of regulatory interactions in the living cell and may provide highly specific recognition …
of regulatory interactions in the living cell and may provide highly specific recognition …
Sub‐angstrom modeling of complexes between flexible peptides and globular proteins
A wide range of regulatory processes in the cell are mediated by flexible peptides that fold
upon binding to globular proteins. Computational efforts to model these interactions are …
upon binding to globular proteins. Computational efforts to model these interactions are …
CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site
Protein–peptide interactions play a key role in cell functions. Their structural
characterization, though challenging, is important for the discovery of new drugs. The CABS …
characterization, though challenging, is important for the discovery of new drugs. The CABS …
GalaxyPepDock: a protein–peptide docking tool based on interaction similarity and energy optimization
Protein–peptide interactions are involved in a wide range of biological processes and are
attractive targets for therapeutic purposes because of their small interfaces. Therefore …
attractive targets for therapeutic purposes because of their small interfaces. Therefore …
[HTML][HTML] A unified conformational selection and induced fit approach to protein-peptide docking
Protein-peptide interactions are vital for the cell. They mediate, inhibit or serve as structural
components in nearly 40% of all macromolecular interactions, and are often associated with …
components in nearly 40% of all macromolecular interactions, and are often associated with …
[HTML][HTML] Harnessing protein folding neural networks for peptide–protein docking
Highly accurate protein structure predictions by deep neural networks such as AlphaFold2
and RoseTTAFold have tremendous impact on structural biology and beyond. Here, we …
and RoseTTAFold have tremendous impact on structural biology and beyond. Here, we …